genome.fa.s8943.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008943.1 Hibiscus syriacus cultivar Beakdansim tig00112264_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1742779

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 553 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1479037--1479091	19	2.8	20	79	17	62	25	10	0	63	1.27
1484491--1484539	19	2.5	20	78	21	59	24	8	0	67	1.18
1490176--1490209	16	2.1	17	89	10	54	23	0	5	70	1.09
1492030--1492066	19	1.9	19	88	0	56	37	10	5	45	1.62
1505875--1505924	16	3.0	17	81	16	52	78	12	8	2	1.05
1510945--1510983	21	1.9	21	94	5	71	35	7	5	51	1.53
1512747--1512826	35	2.2	37	86	4	110	28	2	36	32	1.71
1512747--1512826	11	6.7	11	70	24	56	28	2	36	32	1.71
1512767--1512828	13	4.9	13	74	18	51	30	1	35	32	1.68
1518424--1518508	35	2.4	37	86	4	111	30	1	35	32	1.66
1518430--1518485	11	4.8	12	74	22	57	30	1	35	32	1.68
1518449--1518510	13	4.9	13	74	18	51	32	0	35	32	1.58
1530648--1530681	13	2.6	13	100	0	68	26	52	0	20	1.46
1535777--1535856	35	2.2	37	91	4	128	27	3	37	31	1.74
1539847--1539922	35	2.1	37	87	4	111	28	3	35	31	1.76
1543866--1543945	35	2.2	37	91	4	128	27	3	37	31	1.74
1551651--1551693	24	1.9	22	81	13	52	27	20	18	32	1.96
1553332--1553374	17	2.5	17	82	17	54	0	13	6	79	0.93
1557824--1557903	35	2.2	37	88	4	119	27	5	37	30	1.78
1568559--1568613	23	2.5	22	85	11	76	0	5	14	80	0.89
1572504--1572555	23	2.3	23	96	0	95	9	13	11	65	1.47
1590660--1590712	25	2.1	25	86	6	72	7	13	16	62	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1602595--1602633	19	2.1	19	90	9	62	23	12	0	64	1.28
1604067--1604105	18	2.2	18	90	0	60	43	35	7	12	1.72
1611825--1611868	18	2.4	18	88	0	61	15	6	36	40	1.74
1617574--1617607	8	4.2	8	88	11	52	0	26	0	73	0.83
1624137--1624196	8	7.8	8	76	12	63	85	10	3	1	0.79
1624137--1624196	23	2.6	23	81	2	75	85	10	3	1	0.79
1624137--1624196	15	3.9	15	80	6	59	85	10	3	1	0.79
1628736--1628788	21	2.6	21	85	5	74	43	5	13	37	1.67
1629948--1629990	20	2.2	20	91	4	70	37	9	4	48	1.56
1631208--1631242	14	2.5	14	95	0	61	28	17	22	31	1.96
1633049--1633126	35	2.2	37	88	4	115	28	5	37	29	1.79
1638648--1638727	35	2.2	37	84	4	101	26	6	36	31	1.81
1642261--1642324	13	5.2	13	75	9	55	25	37	3	34	1.72
1642268--1642346	35	2.3	34	91	2	122	26	35	2	35	1.70
1642722--1642760	17	2.4	16	86	4	51	82	7	10	0	0.86
1642729--1642762	13	2.5	14	85	9	52	82	5	11	0	0.83
1645697--1645738	22	1.9	22	90	9	68	14	11	4	69	1.34
1646060--1646099	9	4.4	9	84	9	55	82	15	2	0	0.77
1646047--1646087	12	3.7	12	81	18	61	85	14	0	0	0.60
1646048--1646087	21	1.9	21	100	0	80	85	15	0	0	0.61
1646047--1646099	20	2.8	18	81	15	63	83	15	1	0	0.74
1656834--1656877	8	5.5	8	81	7	54	0	4	11	84	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1657231--1657272	15	2.6	16	85	7	59	69	0	11	19	1.19
1661369--1661418	8	6.4	8	80	11	59	0	4	12	84	0.76
1661354--1661418	31	2.1	31	82	0	76	4	4	13	76	1.10
1661370--1661412	15	2.8	15	82	6	50	0	4	11	83	0.78
1661369--1661418	23	2.2	23	85	0	64	0	4	12	84	0.76
1665953--1665982	15	1.9	16	93	6	53	0	0	13	86	0.57
1670461--1670492	13	2.5	13	100	0	64	0	0	15	84	0.63
1680200--1680241	22	1.9	22	85	9	59	69	4	9	16	1.33
1684572--1684616	11	4.1	11	82	5	56	71	4	11	13	1.29
1684572--1684613	22	1.9	22	90	9	68	69	4	11	14	1.34
1687242--1687303	31	2.0	31	100	0	124	38	3	29	29	1.73
1691281--1691349	35	2.0	35	94	0	120	27	37	2	31	1.72
1692166--1692199	6	5.5	6	86	6	50	82	2	14	0	0.79
1692166--1692199	13	2.8	12	86	8	50	82	2	14	0	0.79
1698089--1698121	17	2.1	17	88	11	52	30	24	9	36	1.86
1699079--1699137	26	2.3	26	85	8	77	8	13	6	71	1.30
1706460--1706487	11	2.5	11	100	0	56	0	14	7	78	0.95
1708442--1708606	90	1.8	89	93	1	285	38	9	7	44	1.65
1708568--1708637	22	3.3	21	68	16	63	47	4	7	41	1.50
1710180--1710222	20	2.2	20	91	4	70	37	9	4	48	1.56
1710563--1710587	13	1.9	13	100	0	50	28	40	0	32	1.57
1713223--1713299	35	2.1	37	90	4	122	28	3	36	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1718900--1718979	35	2.2	37	91	4	128	27	3	37	31	1.74
1721944--1721980	15	2.5	15	100	0	74	29	8	43	18	1.79
1723611--1723635	11	2.3	11	100	0	50	40	8	36	16	1.77
1723655--1723708	24	2.2	26	84	12	71	57	9	16	16	1.64
1730785--1730810	10	2.6	10	100	0	52	50	0	30	19	1.48
1734558--1734652	49	1.9	49	80	0	109	18	18	26	35	1.95
1735133--1735176	18	2.2	20	88	11	65	86	9	4	0	0.70

Tables:   1   2   3   4   5

The End!