genome.fa.s8960.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008960.1 Hibiscus syriacus cultivar Beakdansim tig00112294_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  362692

Tables:   1   2   3   

This is table  2  of  3  ( 251 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143417--143505	33	2.7	33	89	1	133	47	22	19	11	1.81
143417--143475	19	3.4	18	73	22	63	45	20	22	11	1.83
143510--143554	19	2.4	19	88	0	63	13	17	24	44	1.85
143521--143583	19	3.3	19	86	4	90	11	22	17	49	1.78
143671--143948	94	3.1	93	85	9	378	48	16	11	22	1.79
145637--145732	20	5.2	20	72	23	84	46	18	22	11	1.81
145684--145737	14	3.5	14	73	22	54	46	22	22	9	1.80
145635--145737	33	2.9	34	82	10	118	46	19	23	10	1.81
145738--145830	33	2.8	33	88	1	123	10	20	24	44	1.83
146381--146495	20	5.6	21	89	4	164	19	22	18	40	1.92
146493--146532	21	1.9	21	85	10	55	42	17	20	20	1.89
147066--147111	18	2.6	19	86	10	62	63	4	8	23	1.42
151505--151555	21	2.4	21	96	0	93	15	33	15	35	1.90
152732--152820	46	2.0	46	93	2	153	28	26	19	25	1.99
152803--152908	45	2.4	45	100	0	212	28	23	16	32	1.96
157180--157220	13	3.2	13	96	0	73	14	21	12	51	1.75
157330--157369	7	5.9	7	88	5	64	85	0	15	0	0.61
157974--158012	20	2.0	20	89	0	60	33	10	23	33	1.88
161190--161249	31	2.0	31	86	3	86	76	1	5	16	1.04
161516--161573	16	3.6	16	72	9	55	46	17	15	20	1.84
169948--170073	61	2.1	61	81	3	146	25	23	18	33	1.97
176102--176144	2	21.5	2	90	0	68	51	4	0	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177739--177790	20	2.6	20	100	0	104	30	19	15	34	1.93
177825--178097	107	2.5	106	85	3	359	24	17	19	38	1.93
179418--179456	19	2.1	19	90	0	60	23	35	15	25	1.94
179404--179566	67	2.5	64	83	3	191	30	24	15	29	1.96
179354--179566	64	3.3	63	77	7	194	29	24	16	29	1.97
187906--187944	19	2.1	19	95	0	69	20	38	15	25	1.92
187843--188054	64	3.2	64	77	9	187	28	25	16	29	1.97
191445--191515	36	2.0	36	88	0	106	38	18	7	36	1.78
192153--192178	2	13.0	2	100	0	52	50	0	0	50	1.00
193083--193269	57	3.3	57	93	0	302	28	12	22	36	1.91
193266--193305	20	2.0	20	85	0	53	37	10	22	30	1.87
193701--193737	2	18.5	2	94	0	65	45	0	2	51	1.15
195320--195388	36	1.9	36	84	0	93	42	14	5	37	1.70
203191--203248	24	2.4	24	100	0	116	60	0	32	6	1.23
204770--204811	2	21.0	2	100	0	84	50	0	0	50	1.00
205312--205862	46	11.8	46	84	5	673	20	22	10	46	1.81
205329--205830	72	7.1	72	73	15	458	20	22	10	46	1.81
208508--208550	2	21.5	2	100	0	86	48	0	0	51	1.00
210750--211398	46	14.2	46	88	1	935	22	20	10	46	1.80
210975--211017	20	2.1	20	91	4	68	20	23	4	51	1.66
213584--213634	20	2.4	21	87	6	68	33	11	27	27	1.92
214297--214381	23	3.8	23	87	3	111	28	15	28	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214298--214389	46	2.0	44	85	8	123	27	15	28	29	1.96
215902--215944	21	2.0	22	81	4	52	55	23	0	20	1.43
230616--230690	23	3.4	22	78	7	80	28	17	26	28	1.98
233624--233931	82	3.8	82	84	0	366	35	17	10	36	1.84
233620--233973	164	2.1	167	83	4	441	35	17	10	36	1.84
239511--239551	21	2.0	20	86	9	57	46	2	26	24	1.65
241346--241376	14	2.2	14	100	0	62	0	19	0	80	0.71
243802--243840	20	2.0	20	89	0	60	38	23	5	33	1.77
251995--252037	17	2.4	19	84	7	54	81	9	9	0	0.88
253651--253696	18	2.6	18	92	0	74	26	47	23	2	1.63
253651--253696	6	7.7	6	87	0	56	26	47	23	2	1.63
253700--253907	6	34.7	6	83	0	236	31	29	16	22	1.96
253891--253935	6	7.5	6	82	0	54	37	17	13	31	1.89
253891--253935	12	3.8	12	87	0	63	37	17	13	31	1.89
254119--254272	74	2.1	74	81	0	173	40	20	16	22	1.90
259370--259441	16	4.2	17	77	13	67	51	0	2	45	1.15
259407--259438	2	16.0	2	100	0	64	50	0	0	50	1.00
261799--261923	57	2.2	57	88	0	178	32	13	16	37	1.88
261999--262031	12	2.8	12	95	0	57	45	9	24	21	1.80
271484--271533	21	2.2	23	83	16	61	60	8	12	20	1.57
275509--275611	23	4.5	23	87	0	134	37	25	21	15	1.92
275885--275918	17	2.1	17	88	5	52	26	14	2	55	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276446--276485	20	2.0	20	85	4	55	37	17	12	32	1.87
281100--281144	23	2.0	23	90	0	72	31	22	22	24	1.99
286220--286328	54	2.0	55	92	1	184	48	16	6	28	1.71
291163--291211	22	2.2	22	96	0	89	30	6	14	48	1.67
320238--320316	30	2.6	31	88	6	108	41	6	8	43	1.61
321365--321638	33	7.6	34	73	17	153	49	3	5	41	1.43
321366--321638	107	2.5	106	81	12	317	49	3	5	41	1.43
321365--321693	40	8.9	37	75	18	255	48	3	5	41	1.45
321365--321678	38	8.6	36	75	17	274	48	3	6	41	1.46
321365--321694	75	4.5	72	77	16	261	48	3	5	41	1.45
321807--321856	14	3.4	15	76	13	50	14	10	0	76	1.03
322930--322969	21	2.0	20	85	14	55	15	5	2	77	1.04
322930--322969	20	2.0	21	85	5	55	15	5	2	77	1.04
323018--323055	18	2.1	18	85	9	51	7	10	0	81	0.87
323062--323258	5	37.4	5	66	21	50	18	8	2	71	1.22
323022--323209	21	8.9	20	69	18	80	16	8	1	73	1.12
323137--323253	9	13.4	9	67	22	63	14	10	2	72	1.21
323128--323212	33	2.6	34	78	16	106	14	9	1	75	1.10
326812--327074	95	2.7	95	88	3	357	31	17	18	31	1.94
327870--328412	84	6.5	84	87	2	669	33	23	17	24	1.96
327869--328495	84	7.4	85	82	6	484	33	23	17	25	1.96
329225--329557	73	4.5	73	79	13	324	48	2	6	42	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329213--329557	106	3.1	108	77	11	331	48	2	6	42	1.43
329213--329560	40	9.3	37	77	15	287	47	2	6	42	1.43
330660--330770	27	4.0	27	78	16	79	19	5	2	72	1.17
330757--330792	16	2.2	16	90	0	54	36	5	0	58	1.22
330792--330843	16	3.1	16	83	10	61	9	11	0	78	0.95
330799--330886	12	8.1	11	69	17	51	13	9	0	77	0.99
330799--331057	21	12.2	20	65	20	86	14	9	1	74	1.15
330830--330882	20	2.8	17	79	20	61	16	7	0	75	1.02
330769--331011	126	1.9	128	80	9	291	17	9	1	71	1.19
330922--331057	13	10.4	13	70	21	56	11	9	2	75	1.14
330921--331046	57	2.3	53	75	16	123	11	9	2	76	1.12
330951--331064	57	2.0	57	80	10	126	14	8	2	74	1.16
332495--332524	14	2.1	14	100	0	60	80	0	6	13	0.91
332495--332536	14	3.0	14	89	6	50	78	2	9	9	1.05
332539--332577	20	1.9	21	89	5	62	76	0	7	15	0.99
332609--332651	7	6.1	7	81	7	52	76	2	0	20	0.89
332707--332766	3	19.3	3	83	13	77	65	1	0	33	1.03
332744--333059	152	2.1	154	88	5	473	54	7	17	21	1.67
333151--333181	15	2.1	15	93	0	53	83	0	0	16	0.64
333144--333207	21	2.8	22	77	13	58	78	0	4	17	0.92
334818--336127	252	5.2	252	83	2	1475	24	18	23	33	1.97
334940--336130	84	14.2	84	82	3	1279	24	18	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336142--336780	120	5.3	121	80	3	725	25	16	25	33	1.96
336142--336774	241	2.6	241	86	2	862	25	16	25	32	1.96
336863--337063	64	3.1	63	86	2	276	30	12	19	36	1.90
337997--338256	95	2.7	95	85	4	328	31	16	17	33	1.93
339844--339885	16	2.7	16	92	3	68	30	35	7	26	1.83
340713--340799	5	17.4	5	71	17	56	79	3	4	12	1.01
340707--340840	9	14.9	9	71	20	77	76	2	5	15	1.08
340707--340792	25	3.5	24	77	11	86	77	3	5	12	1.07
340974--341020	3	15.3	3	82	12	60	65	2	0	31	1.04
340994--341307	155	2.0	152	88	6	472	55	6	16	21	1.64

Tables:   1   2   3