genome.fa.s9017.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009017.1 Hibiscus syriacus cultivar Beakdansim tig00112407_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1192163

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1144177--1144264	23	3.8	23	77	14	99	30	26	25	18	1.98
1150752--1150808	23	2.5	23	88	0	78	28	28	29	14	1.95
1151822--1151892	35	2.0	36	97	2	135	19	30	32	16	1.95
1153727--1153760	16	2.2	16	89	5	52	64	2	2	29	1.22
1154788--1154863	32	2.4	32	90	0	116	35	15	22	26	1.94
1160350--1160381	15	2.1	15	94	0	55	21	0	6	71	1.07
1161323--1161384	23	2.9	22	86	11	85	59	1	0	38	1.07
1166140--1166182	21	2.0	21	95	0	77	20	34	13	30	1.92
1168823--1169213	184	2.1	184	89	3	581	45	7	3	43	1.50
1172841--1172888	22	2.2	22	82	14	55	22	4	8	64	1.38
1180936--1181049	40	2.7	42	73	13	117	35	28	17	19	1.94
1180870--1181459	137	4.3	137	90	1	925	34	26	16	23	1.95
1180870--1181459	273	2.2	274	92	1	997	34	26	16	23	1.95
1181359--1181497	40	3.4	40	74	13	147	35	28	15	20	1.93
1181391--1181540	43	3.6	43	76	13	168	36	28	16	20	1.93
1181216--1181679	220	2.1	220	92	0	775	35	26	16	22	1.95
1181352--1181542	83	2.3	83	91	0	319	36	28	16	19	1.93
1181402--1181530	40	3.2	40	71	7	116	35	27	15	20	1.93
1181079--1181816	357	2.1	356	92	0	1217	34	26	16	22	1.95
1181436--1181953	137	3.8	137	92	0	856	34	26	16	22	1.95
1181709--1181812	40	2.5	42	78	15	126	34	30	15	19	1.93
1181079--1182099	357	2.9	347	84	6	1065	34	25	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1181853--1181991	40	3.4	40	72	13	129	36	27	15	20	1.93
1181846--1182036	83	2.3	83	84	1	249	35	27	15	21	1.93
1181703--1182099	220	1.8	221	84	1	546	34	26	15	23	1.95
1182255--1182285	3	10.3	3	100	0	62	35	0	0	64	0.94

Tables:   1   2   3   4   5   6

The End!