genome.fa.s9028.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009028.1 Hibiscus syriacus cultivar Beakdansim tig00112428_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  486293

Tables:   1   2   

This is table  2  of  2  ( 239 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217501--217590	14	5.7	14	69	23	63	44	22	23	10	1.82
217493--217607	33	3.5	33	97	0	221	46	20	22	10	1.80
217515--217612	19	5.7	19	69	22	90	44	21	22	11	1.83
217608--217697	33	2.7	33	92	0	144	10	21	23	45	1.81
217639--217738	19	5.4	19	76	13	102	12	23	20	45	1.84
217624--217680	14	3.7	14	70	20	51	10	22	22	43	1.84
217629--217739	33	3.0	36	87	10	138	12	24	18	44	1.85
217664--217738	20	3.8	20	82	5	98	13	24	17	45	1.84
217814--217882	32	2.1	33	89	2	104	46	18	23	11	1.82
218064--218118	22	2.5	22	81	0	74	20	16	40	23	1.91
218265--218418	20	7.7	20	79	7	159	18	17	26	37	1.93
218264--218418	40	3.8	40	81	7	179	18	17	26	38	1.92
218411--218460	21	2.4	21	79	0	55	26	16	22	36	1.94
218490--218558	20	3.4	20	72	4	75	15	15	33	34	1.90
218464--218560	41	2.4	40	96	3	178	17	15	31	35	1.91
218769--218812	21	2.1	21	87	8	63	61	13	9	15	1.56
219389--219703	157	2.0	158	98	1	614	38	17	11	32	1.85
226993--227025	4	8.2	4	100	0	66	51	24	0	24	1.48
232056--232145	25	3.5	26	80	15	98	42	4	0	53	1.21
232071--232175	29	3.8	29	76	14	87	40	4	0	55	1.21
232126--232195	31	2.3	29	83	9	79	41	1	1	55	1.17
232281--232347	31	2.2	31	91	0	107	46	11	8	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233634--233698	33	2.0	33	88	5	98	24	10	4	60	1.49
237464--237902	224	1.9	227	81	6	525	40	15	13	30	1.85
238566--238620	18	2.9	19	76	12	60	56	3	0	40	1.17
242362--242405	3	14.7	3	100	0	88	65	0	0	34	0.93
242404--242434	3	10.3	3	100	0	62	35	0	0	64	0.94
255393--255880	228	2.1	227	96	0	886	44	7	7	39	1.62
255926--255976	20	2.5	20	82	17	70	56	13	13	15	1.67
256120--256162	20	2.3	19	88	11	63	51	11	16	20	1.75
258378--258421	21	2.1	21	91	0	70	40	11	31	15	1.83
258455--258520	33	2.0	33	90	0	105	28	0	48	22	1.51
260312--260360	19	2.6	19	93	0	80	30	2	10	57	1.43
260695--261830	399	2.8	399	96	0	2053	36	14	16	32	1.90
260695--261830	199	5.7	200	96	0	2030	36	14	16	32	1.90
263096--263160	25	2.6	25	80	0	85	35	9	13	41	1.77
263507--263579	23	3.2	23	88	0	101	34	4	21	39	1.73
264007--264043	18	2.1	18	89	0	56	32	5	10	51	1.60
263999--264045	24	2.0	24	86	0	67	34	4	14	46	1.64
264303--264389	39	2.2	39	91	0	147	48	19	13	18	1.81
268337--268394	29	2.0	29	82	0	71	17	34	25	22	1.96
268434--268517	24	3.7	23	81	13	95	22	36	27	13	1.91
268451--268494	10	4.4	10	88	11	72	22	38	29	9	1.85
268432--268495	20	2.9	22	84	13	87	21	39	28	10	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268479--268565	33	2.6	33	87	3	113	25	27	36	10	1.88
272392--272449	24	2.4	23	88	8	89	24	36	29	10	1.88
278696--278725	15	2.0	15	93	0	51	40	10	20	30	1.85
298220--298270	24	2.1	24	88	0	75	60	11	19	7	1.55
299026--299344	154	2.0	160	95	4	580	47	5	10	36	1.61
299448--299476	2	14.5	2	100	0	58	48	0	0	51	1.00
300069--300117	6	8.2	6	95	0	80	53	34	12	0	1.39
301293--301323	2	15.5	2	93	0	53	45	0	3	51	1.17
301307--301354	16	3.1	16	85	5	64	33	4	16	45	1.67
302496--302549	2	28.0	2	92	7	94	50	0	0	50	1.00
305844--305966	39	3.2	39	95	0	210	32	27	15	24	1.95
313866--314078	104	2.0	106	97	2	403	26	26	13	33	1.94
315272--315298	14	1.9	14	100	0	54	44	29	0	25	1.54
315499--315532	15	2.3	15	89	0	50	11	11	0	76	1.02
330504--331766	631	2.0	631	90	1	2014	33	18	16	32	1.93
334808--334866	29	2.0	29	100	0	118	23	13	13	49	1.78
339422--339480	29	2.0	29	96	0	109	25	13	11	49	1.76
347606--347639	14	2.4	14	95	0	59	23	35	35	5	1.79
347613--347643	14	2.2	14	94	0	53	22	38	29	9	1.86
347699--347804	29	3.7	29	98	0	203	23	27	34	14	1.93
352817--352876	23	2.4	25	72	8	61	31	3	3	61	1.28
355973--356001	12	2.4	12	100	0	58	17	24	41	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355994--356030	19	1.9	19	94	0	65	8	24	48	18	1.75
363213--363241	13	2.1	14	93	6	51	24	27	31	17	1.97
363213--363241	7	4.3	7	91	8	51	24	27	31	17	1.97
364174--364227	24	2.2	24	83	6	65	22	3	37	37	1.72
373328--373401	38	1.9	37	83	5	94	47	5	1	45	1.34
373991--374063	36	2.0	37	84	10	96	50	1	4	43	1.29
374577--374612	16	2.2	16	95	0	63	69	2	0	27	1.02
381774--381808	6	5.5	6	93	6	52	0	71	0	28	0.86
381768--381808	20	2.0	20	90	9	66	0	70	0	29	0.87
381768--381812	7	6.6	7	85	14	67	0	68	0	31	0.89
382924--382951	2	14.0	2	100	0	56	50	0	0	50	1.00
384488--384517	15	1.9	16	93	6	53	20	0	3	76	0.92
398763--398802	21	1.9	22	90	10	66	20	40	27	12	1.88
399337--399473	44	3.1	44	93	0	238	40	11	21	26	1.88
401437--401470	17	1.9	18	88	5	52	64	5	0	29	1.17
402741--402771	16	1.9	16	93	0	53	54	12	6	25	1.62
403382--403572	98	1.9	98	93	0	328	30	18	15	35	1.92
404354--404387	17	1.9	18	94	5	61	29	0	0	70	0.87
410642--410697	17	3.1	17	74	25	53	42	0	0	57	0.99
410731--410760	15	2.0	15	93	0	51	63	0	0	36	0.95
410843--410920	31	2.5	31	85	0	102	23	23	14	39	1.90
412986--413054	21	3.4	21	72	11	63	60	1	0	37	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412968--413069	35	2.9	35	76	8	91	60	1	0	37	1.08
418355--418765	205	2.0	205	96	0	761	32	19	17	31	1.95
424516--424562	20	2.3	20	96	3	85	34	8	12	44	1.73
424559--424591	2	16.5	2	100	0	66	48	0	0	51	1.00
424766--424829	31	2.1	29	82	5	74	53	20	6	20	1.67
424812--424845	16	2.1	16	94	0	59	61	23	2	11	1.43
426231--426271	7	5.9	7	88	0	55	21	0	31	46	1.52
426413--426475	11	5.9	11	69	14	51	38	1	3	57	1.24
433738--433797	29	2.1	29	100	0	120	23	13	13	50	1.77
442049--442422	40	9.1	41	73	11	205	37	16	16	29	1.91
442049--442277	42	5.7	42	73	9	138	34	14	17	32	1.90
450043--450715	149	4.7	148	81	8	766	20	33	20	25	1.97
450208--450399	46	4.2	45	69	19	119	20	34	21	23	1.97
450208--450886	137	4.9	138	83	6	710	21	33	21	23	1.97
450053--450752	286	2.5	286	86	3	928	20	33	21	24	1.97
450488--450886	136	2.9	135	88	2	530	21	34	21	22	1.97
453277--453341	23	2.8	23	95	0	112	7	43	26	23	1.80
453305--453381	33	2.3	33	81	0	91	10	38	27	23	1.87
456308--456425	60	2.0	60	86	6	168	39	16	11	31	1.85
462878--462940	29	2.2	29	82	0	72	57	7	11	23	1.60
463666--463724	30	2.0	30	93	0	100	44	8	13	33	1.74
464059--464164	27	3.9	27	69	16	74	50	0	1	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464172--464216	14	3.2	15	84	12	60	48	0	0	51	1.00
464135--464201	25	2.7	25	71	11	66	52	1	2	43	1.25
464249--464298	19	2.7	19	84	3	66	54	0	2	44	1.11
464199--464302	50	2.0	52	82	10	126	47	0	0	51	1.07
466327--466351	2	12.5	2	100	0	50	48	0	0	52	1.00
476990--477033	2	22.5	2	95	4	81	50	0	0	50	1.00
477179--477209	13	2.3	14	94	5	55	51	3	0	45	1.17
481572--481612	14	3.0	14	82	3	57	17	14	17	51	1.77
484495--484565	20	3.5	20	100	0	142	19	23	11	45	1.83

Tables:   1   2

The End!