genome.fa.s9042.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009042.1 Hibiscus syriacus cultivar Beakdansim tig00112452_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  514287

Tables:   1   2   3   

This is table  3  of  3  ( 352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360766--360834	20	3.5	20	89	0	102	26	17	27	28	1.97
360847--360942	41	2.3	41	84	7	115	19	22	19	37	1.94
360867--360964	21	4.7	21	82	2	117	18	24	18	38	1.93
361595--361625	5	6.2	5	92	0	53	0	38	0	61	0.96
369344--369395	21	2.5	21	81	3	61	38	19	25	17	1.93
369384--369491	20	5.3	20	80	6	101	33	25	16	25	1.96
369446--369498	20	2.7	20	90	0	79	24	26	20	28	1.99
370046--370087	19	2.2	19	91	0	66	52	26	16	4	1.63
370083--370295	19	11.1	19	76	15	181	11	22	22	43	1.85
370212--370246	14	2.7	13	91	8	54	8	25	25	40	1.84
370180--370266	44	1.9	46	88	4	133	11	24	27	36	1.90
370238--370295	20	2.9	20	80	10	64	13	24	18	43	1.87
372700--372732	10	3.2	10	95	4	57	18	12	0	69	1.18
373869--373934	19	3.8	19	75	20	72	43	21	22	12	1.85
373939--374003	19	3.7	19	66	19	59	10	26	20	43	1.84
376465--376518	24	2.2	24	90	0	81	38	20	16	24	1.92
377570--377647	20	3.9	20	96	0	138	37	23	23	16	1.94
377572--377659	40	2.4	36	83	11	108	38	22	23	14	1.92
377666--377733	19	3.8	19	83	12	92	13	20	17	48	1.80
377850--377886	14	2.6	14	86	0	56	48	21	0	29	1.50
379750--379803	20	2.7	20	88	0	81	37	24	24	14	1.93
379843--379924	18	4.6	19	79	14	104	13	20	20	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379909--379963	20	2.8	19	83	8	65	16	23	23	36	1.94
379843--379944	33	2.8	34	76	23	102	13	22	21	42	1.88
380453--380497	18	2.5	18	92	0	81	13	13	44	28	1.81
382111--382154	22	2.0	22	95	0	79	18	15	45	20	1.85
382322--382436	20	5.7	19	76	9	77	24	17	24	33	1.96
382404--382517	41	2.8	41	89	5	142	20	23	19	36	1.95
382424--382500	21	3.7	21	78	3	84	18	24	18	38	1.92
382446--382517	20	3.5	20	79	3	90	16	23	19	40	1.91
382596--382641	19	2.3	20	81	7	58	26	17	28	28	1.98
389762--389793	2	15.5	2	93	6	55	46	3	0	50	1.17
393133--393179	3	15.7	3	95	0	85	65	2	0	31	1.04
395264--395309	22	2.1	22	100	0	92	26	23	21	28	1.99
403586--403687	53	2.0	51	81	11	118	39	0	17	42	1.56
406397--406425	10	2.9	10	100	0	58	51	17	10	20	1.74
407328--407366	14	2.9	13	92	7	69	53	7	23	15	1.67
408252--408434	45	4.1	45	85	2	233	39	16	20	24	1.92
417540--417589	25	2.0	25	96	0	91	42	12	4	42	1.60
424402--424559	21	7.8	20	72	7	86	38	25	17	18	1.92
424526--424795	20	13.5	20	81	6	269	37	25	17	20	1.94
425969--426210	120	2.0	121	99	0	477	39	14	19	26	1.90
428052--428221	19	9.7	19	76	19	172	45	18	20	15	1.85
428039--428215	72	2.6	66	83	11	223	46	18	20	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428143--428197	14	3.6	14	73	21	56	45	20	23	10	1.82
428039--428215	33	5.2	33	86	9	232	46	18	20	14	1.83
428242--428278	14	2.6	14	91	0	65	45	21	0	32	1.52
430171--430235	19	3.4	19	87	4	87	44	27	16	10	1.81
430226--430282	14	3.7	14	77	20	60	45	22	21	10	1.82
430208--430298	33	2.8	32	91	3	155	46	21	20	10	1.82
430188--430303	51	2.3	51	81	13	132	45	23	20	10	1.81
430299--430427	19	7.3	19	75	17	125	8	17	28	45	1.77
430299--430390	33	2.8	33	93	3	150	7	18	28	45	1.76
430474--430922	92	4.9	93	95	4	812	45	19	13	21	1.84
430474--430922	180	2.5	184	93	5	808	45	19	13	21	1.84
430913--430939	13	2.1	13	100	0	54	55	22	14	7	1.64
432620--432733	33	3.5	33	96	1	212	46	20	22	10	1.81
432622--432738	14	7.1	18	69	23	87	45	20	23	11	1.83
432734--432814	33	2.5	33	93	0	135	9	20	22	46	1.80
432750--432806	14	3.7	14	70	20	51	10	22	22	43	1.84
432790--432867	41	1.9	41	97	0	147	12	25	16	44	1.83
432791--432866	21	3.7	21	83	3	109	11	25	17	46	1.82
432947--433015	32	2.2	32	89	0	102	47	20	20	11	1.80
433186--433240	22	2.5	22	81	0	74	20	16	40	23	1.91
433382--433534	20	7.7	20	79	7	150	18	18	26	36	1.94
433381--433534	40	3.8	40	79	5	168	18	18	25	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433521--433603	21	4.0	21	73	6	78	25	16	24	33	1.96
433501--433599	42	2.4	43	77	11	100	21	18	23	37	1.94
436540--436627	39	2.3	38	90	2	131	7	17	40	34	1.78
441962--442000	21	1.9	21	89	5	62	58	0	17	23	1.38
442250--442283	15	2.3	15	90	10	52	52	0	0	47	1.00
442357--442394	20	1.9	20	88	0	58	50	0	2	47	1.15
443204--443235	15	2.1	15	100	0	64	6	0	25	68	1.12
451496--451525	10	3.0	10	95	0	51	53	0	0	46	1.00
453149--453215	33	2.0	33	85	5	91	34	4	5	55	1.45
459535--459566	16	2.0	16	93	0	55	34	25	6	34	1.81
461829--461884	20	2.8	20	78	7	69	30	28	14	26	1.95
461894--461960	21	3.2	21	85	2	82	26	25	17	29	1.98
461931--461975	20	2.2	20	96	0	81	40	24	17	17	1.91
466466--466499	12	2.8	12	90	0	50	14	0	29	55	1.40
467237--467407	20	8.6	20	74	10	136	25	15	25	33	1.95
467251--467326	39	1.9	40	89	2	118	18	17	25	39	1.91
467881--468085	36	5.5	35	78	13	214	47	2	3	46	1.32
467935--468094	79	2.0	79	90	4	252	47	3	3	46	1.34
467899--468064	43	4.2	42	74	16	117	48	2	2	46	1.28
469680--469730	25	2.0	26	84	3	68	31	0	3	64	1.11
469764--469801	18	2.1	18	90	9	60	23	2	2	71	1.12
469805--469830	11	2.4	11	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469770--469851	26	3.2	25	77	13	76	21	2	1	74	1.01
469860--469909	20	2.5	20	83	6	57	20	6	0	74	1.03
469883--469937	14	3.7	15	76	13	51	12	5	3	78	1.06
469883--469937	22	2.5	22	77	11	58	12	5	3	78	1.06
471758--471793	2	18.5	2	94	5	65	52	0	0	47	1.00
471952--472055	20	5.2	20	72	17	90	39	10	19	30	1.85
473167--473203	3	12.3	3	100	0	74	0	32	0	67	0.91
482958--483009	18	2.9	17	86	8	68	34	0	19	46	1.50
484703--484744	21	2.0	21	90	9	68	35	9	9	45	1.69
484906--484944	21	1.9	20	89	5	60	33	10	12	43	1.77
484627--485715	199	5.5	199	86	3	1393	39	13	13	33	1.85
485752--485828	20	3.8	20	80	0	82	44	12	14	28	1.82
488342--488885	180	3.0	181	80	4	643	37	13	13	35	1.84
488902--489219	128	2.5	125	81	7	365	41	11	13	33	1.80
489217--489822	225	2.7	226	90	2	952	31	16	13	38	1.88
491632--491673	14	3.1	14	79	6	50	66	2	7	23	1.28
492992--493033	20	2.0	21	81	13	50	61	4	4	28	1.36
497499--497570	37	1.9	37	100	0	144	19	20	16	43	1.89
504197--504257	31	2.0	31	93	0	104	42	8	0	49	1.32
504228--504348	42	2.9	43	85	2	147	41	6	0	51	1.34
504309--504468	31	5.2	31	78	5	164	37	9	1	51	1.42
504266--504354	43	2.1	43	89	4	135	41	7	1	49	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504197--504376	73	2.5	71	82	8	202	40	8	0	50	1.37
511261--511330	22	3.2	22	72	0	59	28	18	22	30	1.98

Tables:   1   2   3

The End!