genome.fa.s9068.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009068.1 Hibiscus syriacus cultivar Beakdansim tig00112495_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  670922

Tables:   1   2   3   

This is table  2  of  3  ( 286 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292995--293084	14	5.7	14	69	23	63	44	22	23	10	1.82
292987--293101	33	3.5	33	97	0	221	46	20	22	10	1.80
293009--293106	19	5.7	19	69	22	90	44	21	22	11	1.83
293102--293182	33	2.5	33	93	0	135	9	20	22	46	1.80
293118--293174	14	3.7	14	70	20	51	10	22	22	43	1.84
293158--293235	41	1.9	41	97	0	147	12	25	16	44	1.83
293159--293234	21	3.7	21	83	3	109	11	25	17	46	1.82
293314--293384	33	2.2	33	89	0	106	49	18	21	11	1.78
293566--293620	22	2.5	22	81	0	74	20	16	40	23	1.91
293767--293920	20	7.7	20	81	7	168	18	18	26	37	1.93
293766--293920	40	3.8	40	82	4	186	18	18	26	37	1.93
293907--293989	21	4.0	21	73	6	78	25	16	24	33	1.96
293887--293985	42	2.4	43	77	11	100	21	18	23	37	1.94
294756--294797	18	2.5	17	88	7	59	54	0	4	40	1.21
311423--311448	13	2.0	13	100	0	52	15	7	0	76	0.99
313106--313164	29	2.0	29	100	0	118	49	13	13	23	1.78
329941--330035	31	3.1	31	83	4	122	23	18	22	35	1.96
333372--333431	31	1.9	31	96	0	111	26	26	10	36	1.88
346900--346961	31	2.0	31	100	0	124	12	22	9	54	1.67
349869--350072	101	2.0	101	100	0	408	25	21	31	22	1.98
353353--353409	14	4.4	14	72	17	50	10	12	22	54	1.68
353354--353428	24	3.1	24	84	3	89	13	10	20	56	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353353--353428	38	2.0	37	85	10	100	13	11	19	55	1.68
354483--354555	16	4.6	16	94	0	128	8	10	23	57	1.59
355441--355521	21	3.8	21	74	8	74	33	9	24	32	1.88
355440--355519	42	1.9	42	86	0	115	33	10	25	31	1.89
355440--355561	20	5.9	20	75	8	75	31	10	23	33	1.89
355747--355791	2	23.0	2	95	4	83	51	0	0	48	1.00
357463--357493	16	1.9	16	100	0	62	58	3	6	32	1.40
359766--359934	91	1.8	93	88	2	261	24	24	26	25	2.00
359844--360329	130	3.7	128	87	4	650	25	19	30	25	1.98
359943--360277	40	7.9	42	71	13	188	26	17	30	24	1.97
359845--360329	259	1.9	262	86	4	712	24	19	30	25	1.98
360008--360335	46	7.5	44	73	14	207	25	18	30	24	1.98
360368--360436	28	2.4	28	88	7	95	44	14	11	28	1.80
361257--361322	31	2.1	31	91	0	105	37	15	9	37	1.79
361267--361329	31	2.1	31	82	5	76	47	15	7	28	1.74
361309--361409	52	2.0	51	92	5	168	34	18	13	32	1.91
361406--361529	29	4.4	29	83	7	132	48	15	10	25	1.77
361420--361515	29	3.4	29	87	4	135	46	15	10	27	1.78
361406--361529	57	2.2	54	80	8	133	48	15	10	25	1.77
361825--361948	36	3.5	36	76	8	103	37	11	20	30	1.87
361864--361948	36	2.4	36	84	4	109	36	11	21	30	1.89
361900--362132	105	2.3	101	85	8	292	37	12	20	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362106--362187	36	2.3	36	78	4	94	31	12	19	36	1.89
362106--362200	36	2.6	36	78	3	93	35	11	17	34	1.86
361697--362299	273	2.2	268	85	5	811	39	11	17	31	1.86
362048--362366	167	1.9	166	84	7	423	37	11	17	32	1.87
362290--362406	35	3.3	35	83	9	148	35	12	16	35	1.87
362948--362997	4	13.0	4	79	8	59	24	0	24	52	1.48
364822--364892	20	3.1	23	70	22	76	42	11	22	23	1.86
364810--364884	20	3.5	20	70	20	62	38	10	24	26	1.88
364821--364899	26	3.3	25	69	20	78	44	10	21	24	1.83
364806--364901	46	2.1	45	90	1	147	41	9	22	26	1.84
367329--367390	32	2.0	32	96	3	117	61	9	14	14	1.57
372381--372409	2	14.5	2	100	0	58	48	0	0	51	1.00
377802--377882	35	2.3	36	82	2	92	41	20	1	35	1.61
379203--379259	21	2.7	21	97	0	105	42	7	19	31	1.78
380584--380634	18	2.8	18	87	0	66	27	21	27	23	1.99
383939--384015	35	2.2	35	97	0	145	27	14	32	25	1.94
383936--383998	19	3.5	19	63	12	51	26	15	31	25	1.96
384658--384716	29	2.0	29	100	0	118	45	3	20	30	1.67
386149--386236	31	2.8	31	91	1	149	30	25	20	23	1.98
388903--388998	35	2.7	35	91	0	147	30	0	28	41	1.56
412072--412120	23	2.2	22	82	10	55	28	6	2	63	1.30
421518--421555	19	2.0	19	100	0	76	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421783--421840	3	18.3	3	79	10	53	65	1	3	29	1.19
423597--423719	61	2.0	61	100	0	246	51	6	1	40	1.38
424424--424495	18	3.9	18	75	14	58	75	0	8	16	1.04
424424--424488	27	2.4	26	75	12	69	73	0	7	18	1.06
424518--424597	40	2.0	39	83	7	99	58	6	1	33	1.31
426321--426393	30	2.4	30	93	0	128	30	24	19	26	1.98
426379--426471	31	3.0	31	79	3	98	34	21	17	26	1.95
428403--428474	35	2.1	35	94	0	126	27	19	12	40	1.88
428958--429681	106	7.0	105	85	6	906	24	18	22	34	1.96
429102--429681	305	1.9	306	90	1	939	23	18	23	34	1.96
430699--430798	52	1.9	52	82	6	123	15	23	13	49	1.79
438548--438659	48	2.2	52	79	10	115	58	1	5	33	1.31
439068--439139	35	2.1	35	91	0	117	30	19	8	41	1.81
439574--439629	21	2.6	22	80	11	62	60	8	1	28	1.37
441028--441261	21	11.1	21	80	8	253	30	22	21	25	1.99
441021--441264	107	2.3	104	86	3	337	31	22	21	25	1.98
441273--441437	21	7.9	21	77	10	142	23	21	23	32	1.98
442151--442316	21	7.8	21	72	16	137	36	21	19	21	1.95
442144--442350	42	5.0	42	89	2	285	35	21	20	22	1.96
449046--449078	12	2.6	13	95	4	59	54	0	3	42	1.15
449316--449746	214	2.0	214	99	0	853	43	11	11	33	1.77
450112--450172	32	1.9	32	93	0	104	40	4	29	24	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450545--450583	19	2.1	19	100	0	78	35	5	20	38	1.75
451476--451545	23	3.1	22	80	8	79	58	4	1	35	1.26
453506--453643	30	4.8	29	68	18	74	44	5	1	48	1.35
454885--454918	2	17.0	2	100	0	68	50	0	0	50	1.00
466121--466156	2	18.0	2	100	0	72	50	0	0	50	1.00
478001--478079	38	2.1	39	86	6	110	49	0	2	48	1.14
478054--478102	18	2.8	17	78	6	53	55	2	0	42	1.11
480616--480654	5	7.8	5	97	0	69	2	41	41	15	1.61
482102--482135	5	6.8	5	93	0	50	11	41	41	5	1.66
482136--482202	6	11.2	6	96	0	116	2	16	49	31	1.61
482477--482531	22	2.5	22	75	0	56	29	9	23	38	1.85
488255--488333	6	13.2	6	97	0	149	1	16	49	32	1.54
488608--488662	22	2.5	22	75	0	56	29	9	23	38	1.85
495052--495100	24	2.0	25	84	11	66	55	8	4	32	1.48
501259--501462	96	2.1	96	85	0	273	42	19	11	26	1.85
504951--505020	20	3.5	20	83	9	72	28	28	15	27	1.96
504973--505041	20	3.5	19	84	11	77	28	24	14	31	1.95
505831--505869	12	3.2	12	88	3	51	56	30	0	12	1.37
505985--506031	24	2.0	24	91	0	76	29	21	14	34	1.93
508301--508336	18	2.0	18	94	0	63	55	22	2	19	1.56
508585--508624	20	2.0	20	100	0	80	30	15	25	30	1.95
508589--508634	20	2.3	20	84	0	56	39	17	23	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510167--510237	21	3.4	20	76	7	70	21	19	35	23	1.96
510187--510249	21	3.0	21	77	9	65	20	17	38	23	1.93
510688--510740	21	2.5	21	81	0	70	32	32	13	22	1.92
511836--511883	19	2.5	20	93	3	80	10	18	25	45	1.81
512217--512265	22	2.3	21	83	10	64	28	12	36	22	1.90
512223--512281	22	2.7	22	81	0	73	23	16	38	20	1.92
512429--512470	20	2.1	20	90	0	66	16	11	21	50	1.77
512432--512477	20	2.3	20	80	0	56	21	10	19	47	1.80
520210--520291	36	2.3	36	87	8	114	24	30	15	29	1.96
529245--529329	28	3.0	29	75	3	100	31	23	4	40	1.75

Tables:   1   2   3