Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009068.1 Hibiscus syriacus cultivar Beakdansim tig00112495_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  670922

Tables:   1   2   3   

This is table  3  of  3  ( 286 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
530983--531046
28
2.2
28
76
10
67
42
9
15
32
1.79
532023--532106
35
2.5
35
86
7
111
47
0
0
52
1.00
534563--534592
2
15.5
2
93
6
53
50
0
0
50
1.00
534949--534997
17
2.8
17
81
3
53
53
10
16
20
1.72
543527--543581
24
2.3
24
82
14
69
61
1
20
16
1.43
553342--553424
34
2.4
34
84
4
105
27
3
21
46
1.68
559782--559858
23
3.5
23
69
15
72
27
23
24
24
2.00
561405--561507
36
2.9
36
97
0
188
42
16
17
23
1.88
569483--569585
36
2.9
36
97
0
188
42
16
17
23
1.88
574786--574822
19
1.9
19
89
10
58
51
5
8
35
1.55
583778--583818
22
1.9
21
85
14
57
60
2
4
31
1.30
587486--587607
31
4.0
30
76
8
111
27
19
21
31
1.97
587487--587609
62
2.0
62
85
6
169
26
19
21
31
1.97
588853--588897
19
2.2
22
84
11
60
44
0
2
53
1.13
589153--589193
19
2.2
19
86
8
57
41
0
4
53
1.22
591649--591793
36
4.1
36
87
7
206
18
23
20
37
1.94
591649--591793
72
2.0
71
93
4
247
18
23
20
37
1.94
594757--594789
2
16.5
2
100
0
66
51
0
0
48
1.00
594789--594838
24
2.1
24
84
0
64
56
0
8
36
1.29
594915--594942
2
14.0
2
100
0
56
50
0
0
50
1.00
596261--596290
14
2.1
14
93
0
51
46
3
0
50
1.18
601387--601453
26
2.6
26
95
0
116
25
32
19
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
603099--603139
18
2.3
18
91
0
64
26
34
21
17
1.95
603123--603155
15
2.2
15
94
0
57
24
33
24
18
1.97
603341--603420
29
2.8
29
94
1
144
17
21
15
46
1.84
604508--604664
64
2.5
62
82
10
183
27
19
19
33
1.96
608087--608135
18
2.7
18
87
0
80
24
36
24
14
1.93
608322--608401
29
2.8
29
92
1
135
17
20
15
47
1.83
609556--609603
19
2.5
19
90
6
71
22
29
18
29
1.98
610486--610539
20
2.7
20
91
2
90
38
22
9
29
1.85
620970--621161
5
38.2
5
93
6
327
60
0
0
39
1.01
635190--635214
2
12.5
2
100
0
50
48
0
0
52
1.00
637401--637465
31
2.1
31
88
5
96
30
9
21
38
1.85
642585--642617
11
3.0
11
100
0
66
36
0
18
45
1.49
648129--648162
2
17.5
2
93
6
61
52
0
0
47
1.00
648128--648168
10
4.4
9
91
8
57
56
0
0
43
0.99
656131--656230
54
2.0
51
82
11
125
32
15
30
23
1.95
661550--661619
31
2.3
31
78
9
72
50
5
4
40
1.46
661612--661697
30
2.8
30
79
8
102
52
1
3
43
1.26
661612--661707
30
3.1
30
73
8
86
47
1
4
46
1.28
661727--661765
18
2.1
19
90
4
62
35
0
12
51
1.40
661969--662033
31
2.1
31
82
5
78
41
0
3
55
1.15
663251--663293
21
2.0
22
86
4
61
25
2
0
72
0.97
666681--666707
2
13.5
2
100
0
54
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
668468--668576
55
2.0
55
100
0
218
36
11
8
44
1.70
669280--669375
47
2.0
46
86
7
131
25
21
26
27
2.00

Tables:   1   2   3

The End!