genome.fa.s9069.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009069.1 Hibiscus syriacus cultivar Beakdansim tig00112496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  530156

Tables:   1   2   3   

This is table  1  of  3  ( 331 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3893--3941	24	2.0	24	84	8	62	36	12	8	42	1.72
4503--4562	31	1.9	31	82	0	75	33	5	23	38	1.76
5320--5345	12	2.2	12	100	0	52	23	7	0	69	1.14
14212--14243	13	2.5	13	100	0	64	28	25	21	25	1.99
35740--35797	21	2.8	20	71	7	53	68	3	5	22	1.24
35876--36538	323	2.0	326	90	4	1061	45	7	4	42	1.54
39076--39129	20	2.7	20	91	0	81	35	22	14	27	1.93
39138--39205	20	3.4	20	95	0	118	26	27	20	25	1.99
39756--39800	19	2.4	19	92	0	72	48	26	15	8	1.74
39796--39941	19	8.1	19	71	17	105	13	24	19	42	1.87
39829--39916	33	2.6	33	94	1	149	12	27	21	38	1.89
42083--42141	21	2.8	21	73	0	64	27	33	18	20	1.96
43493--43528	14	2.6	14	95	0	63	30	0	25	44	1.54
43677--43803	33	3.9	32	78	12	132	15	21	18	44	1.86
43712--43823	19	6.4	19	68	20	73	18	18	18	43	1.88
43670--43802	66	2.0	66	89	2	205	17	21	18	43	1.88
46080--46104	12	2.1	12	100	0	50	0	28	0	72	0.86
46279--46332	24	2.2	24	90	0	81	40	20	16	22	1.91
47073--47167	20	4.7	20	78	7	93	22	17	26	33	1.96
47094--47188	41	2.3	41	83	3	120	20	18	25	35	1.95
47156--47207	20	2.5	21	84	3	70	19	23	19	38	1.93
49079--49149	37	1.9	37	91	0	115	40	11	11	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49780--49826	25	1.9	24	83	12	60	21	12	0	65	1.25
49832--49864	3	11.3	3	87	6	50	30	0	3	66	1.06
50013--50061	16	2.9	17	79	11	57	20	10	0	69	1.17
50099--50134	1	36.0	1	88	0	54	5	0	0	94	0.31
52886--52955	34	2.1	34	83	5	88	71	8	17	2	1.23
54398--54908	110	4.6	110	93	0	860	34	22	16	25	1.95
56006--56113	37	2.9	37	98	0	207	40	12	10	36	1.78
56659--56696	2	19.0	2	100	0	76	50	0	0	50	1.00
56736--56831	3	31.7	3	74	19	60	29	6	0	64	1.18
56727--56835	25	4.6	24	72	15	77	30	5	0	64	1.16
56728--56835	12	10.1	11	73	20	56	29	5	0	64	1.16
56848--56902	25	2.2	25	83	6	67	12	14	0	72	1.12
56847--56905	26	2.3	26	80	11	68	13	13	0	72	1.11
62125--62215	33	2.8	33	83	1	103	37	10	8	42	1.71
62151--62216	33	2.0	33	90	0	105	40	10	4	43	1.59
72092--72128	10	3.8	10	96	3	67	81	0	0	18	0.70
76464--76532	23	3.0	23	86	0	93	27	26	26	20	1.99
76551--76752	103	2.0	103	94	0	359	36	24	11	27	1.90
78108--78168	21	2.9	21	90	2	95	18	26	24	31	1.97
79051--79093	17	2.6	16	78	7	50	39	25	0	34	1.56
81797--81865	23	3.0	23	82	0	84	27	24	26	21	1.99
87824--87883	21	2.8	21	92	2	93	18	25	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89339--89381	22	1.9	23	85	4	61	46	0	2	51	1.13
92871--92904	6	5.5	6	89	6	50	14	11	17	55	1.68
92871--92904	13	2.8	12	86	8	50	14	11	17	55	1.68
96984--97063	42	1.9	42	89	0	115	27	17	22	32	1.96
97313--97516	42	4.6	42	70	15	126	29	17	22	30	1.97
97433--97457	13	1.9	13	100	0	50	32	24	20	24	1.98
97915--98217	53	5.7	53	87	1	383	30	19	26	24	1.98
98878--98969	45	2.0	45	97	0	175	19	14	6	59	1.56
100581--100639	27	2.2	27	100	0	118	40	13	3	42	1.61
105220--105415	84	2.3	85	77	10	215	36	13	9	40	1.77
108505--108547	21	2.0	21	90	0	68	53	16	9	20	1.70
108851--109008	21	7.8	20	70	7	77	37	25	17	18	1.93
108976--109204	20	11.4	20	78	5	203	37	24	17	20	1.94
109723--109905	20	9.1	20	84	4	217	35	25	18	20	1.95
109022--110420	701	2.0	701	98	0	2717	32	20	17	30	1.95
110598--110644	24	2.0	24	87	8	69	25	14	21	38	1.92
110819--110843	12	2.1	12	100	0	50	72	0	28	0	0.86
113141--113350	72	2.9	72	87	6	293	45	17	22	14	1.85
113127--113344	53	4.1	52	88	10	311	45	17	22	13	1.84
113321--113436	53	2.2	52	86	3	160	18	23	18	38	1.93
113340--113457	53	2.2	53	96	3	220	13	24	17	44	1.85
113359--113457	20	5.4	19	83	14	136	14	23	17	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113563--113598	13	2.6	14	82	8	56	47	19	0	33	1.50
115527--115699	19	9.6	19	76	12	150	45	23	20	10	1.82
115602--115694	33	2.8	33	91	0	159	46	20	21	11	1.82
115561--115699	52	2.7	52	72	8	138	46	22	21	10	1.81
115711--115769	14	3.9	14	76	20	64	6	16	28	47	1.72
115695--115818	33	3.7	33	91	1	185	8	17	27	45	1.78
115695--115786	19	5.4	18	72	24	83	7	17	28	46	1.75
115744--115800	14	3.7	14	72	20	51	8	22	24	43	1.81
117729--117793	21	3.1	21	77	4	87	49	15	24	10	1.76
117915--117985	33	2.2	33	97	0	133	47	18	23	9	1.78
117937--117985	14	2.8	19	65	28	54	46	20	24	8	1.77
117919--117975	14	3.7	14	70	20	51	45	21	24	8	1.80
118365--118577	20	10.6	20	85	5	268	18	19	28	33	1.95
125042--125100	23	2.6	23	88	0	82	40	16	5	37	1.71
124628--125941	489	2.7	490	97	0	2496	40	10	7	41	1.68
125527--125589	23	2.7	23	92	0	99	38	20	4	36	1.74
125940--126000	25	2.4	25	97	0	113	37	11	9	40	1.75
128450--129038	183	3.2	183	94	0	1052	33	15	15	35	1.89
130239--130274	3	12.0	3	87	0	54	27	33	2	36	1.72
130268--130322	12	4.6	12	93	0	83	16	32	10	40	1.83
130240--130327	6	14.7	6	79	4	70	20	31	7	39	1.81
131835--132763	197	4.7	198	94	2	1611	30	17	15	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132861--132905	19	2.4	18	82	7	54	53	11	2	33	1.49
132873--132921	19	2.6	19	93	0	80	55	8	2	34	1.41
134692--134756	32	2.0	33	87	3	96	23	47	0	29	1.52
134789--134853	21	3.1	21	88	0	94	16	29	10	43	1.82
136966--137013	20	2.4	20	82	6	53	22	12	8	56	1.63
137136--137182	20	2.3	20	89	10	78	17	19	8	55	1.67
136925--137391	178	2.6	179	87	5	631	26	16	13	42	1.86
143072--143140	31	2.2	31	84	0	84	34	14	13	37	1.85
145266--145292	4	6.8	4	100	0	54	0	22	0	77	0.76
170969--171047	10	8.3	9	78	9	77	16	27	29	26	1.97
170968--171045	19	4.1	19	79	14	88	17	25	29	26	1.98
170964--171047	29	2.9	28	84	5	105	16	27	27	28	1.97
178270--178328	10	6.2	9	80	9	64	15	25	28	30	1.96
178265--178323	29	2.0	29	90	6	93	15	23	27	33	1.95
178269--178323	19	2.8	19	76	13	67	16	23	29	30	1.96
180652--180719	34	2.0	34	100	0	136	29	17	5	47	1.71
180915--180942	2	14.0	2	100	0	56	50	0	0	50	1.00
193177--193687	83	6.1	83	79	5	512	22	19	27	30	1.98
193188--193702	164	3.1	165	84	3	671	23	20	26	29	1.98
193898--194774	106	8.2	106	92	1	1382	23	17	25	33	1.96
200253--200279	3	9.0	3	100	0	54	66	0	0	33	0.92
211954--211990	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220065--220110	19	2.5	18	82	6	65	50	4	0	45	1.21
225910--225944	18	2.0	18	88	5	54	71	0	0	28	0.86
226835--226866	13	2.3	15	89	10	50	37	0	0	62	0.95
228300--228369	20	3.5	20	70	14	72	31	17	18	32	1.94
228284--228432	40	3.6	41	84	9	187	27	12	22	36	1.91
228284--228465	21	8.7	21	70	6	118	25	14	23	35	1.94
228428--228501	23	3.3	23	83	3	89	24	13	25	36	1.92
228390--228501	23	5.1	21	74	9	73	24	11	25	38	1.89
230044--230073	15	2.0	15	93	0	51	43	0	0	56	0.99
244149--244245	11	8.3	11	67	20	54	78	1	13	7	1.01

Tables:   1   2   3