genome.fa.s9069.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009069.1 Hibiscus syriacus cultivar Beakdansim tig00112496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  530156

Tables:   1   2   3   

This is table  3  of  3  ( 331 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418527--418593	21	3.2	21	66	6	55	23	35	20	19	1.95
418505--418593	42	2.1	42	83	8	110	23	34	20	21	1.96
419946--419981	14	2.6	14	95	0	63	30	0	25	44	1.54
420088--420179	19	5.4	18	68	24	65	47	20	16	15	1.82
420088--420193	33	3.2	32	89	2	149	48	21	16	14	1.81
420137--420195	14	3.9	14	76	20	64	49	25	15	10	1.76
420088--420210	19	7.3	18	68	26	58	46	21	16	15	1.84
420088--420205	33	3.5	33	88	3	148	48	21	16	14	1.81
420206--420336	19	7.7	19	67	23	85	12	21	19	46	1.82
420210--420336	33	3.8	33	91	0	200	12	21	19	46	1.83
420330--420402	20	3.6	20	68	17	51	24	16	24	34	1.95
422853--422906	24	2.2	24	90	0	81	42	18	14	24	1.88
422869--422920	24	2.2	24	82	0	59	38	21	15	25	1.92
423679--423730	21	2.5	21	87	3	70	38	17	23	21	1.93
423781--423866	40	2.2	40	91	0	136	27	25	19	26	1.99
423761--423857	20	4.8	20	94	0	167	24	26	20	27	1.99
424143--424196	14	3.5	14	77	22	63	11	20	20	48	1.80
424125--424195	33	2.2	33	84	0	88	19	19	21	39	1.93
425618--425704	40	2.1	42	89	4	133	21	13	41	22	1.89
425644--425704	21	2.9	21	73	9	70	21	13	42	22	1.87
426046--426098	20	2.7	20	87	0	70	33	28	13	24	1.93
426052--426138	20	4.4	20	82	1	86	36	25	20	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426111--426207	19	5.7	18	73	22	75	46	22	17	13	1.83
426127--426185	14	3.9	14	78	20	64	50	22	15	11	1.76
426111--426201	33	2.8	33	91	0	137	48	23	16	12	1.79
426197--426249	19	2.8	19	94	0	97	13	20	18	47	1.82
426809--426856	18	2.7	18	93	0	87	14	12	45	27	1.81
428175--428233	20	3.0	20	87	0	73	44	22	18	15	1.87
428496--428539	22	2.0	22	95	0	79	18	15	45	20	1.85
428705--428842	41	3.4	41	77	2	161	23	15	24	36	1.93
428725--428838	20	5.7	20	75	6	104	23	15	26	34	1.95
428828--428879	20	2.5	20	84	3	59	19	23	19	38	1.93
428765--428860	41	2.3	41	83	3	104	20	17	25	36	1.94
428869--428921	21	2.5	22	78	6	65	35	18	24	20	1.95
435193--435279	44	2.0	44	86	6	122	56	1	5	36	1.31
435200--435289	44	2.0	44	85	8	121	56	2	4	36	1.32
444722--444816	24	4.0	24	77	2	84	21	13	16	48	1.81
444745--444804	12	5.0	12	78	8	59	16	13	18	51	1.76
451299--451569	137	2.0	132	87	5	391	32	21	15	30	1.94
457730--457770	14	3.0	14	89	10	59	43	29	0	26	1.55
458948--458974	3	9.0	3	100	0	54	66	0	0	33	0.92
459548--459594	23	2.0	23	83	0	58	65	4	2	27	1.22
477493--477531	9	4.3	9	84	9	53	76	0	17	5	0.96
477501--477614	8	13.6	9	69	25	72	71	0	20	8	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477569--477615	9	5.7	9	82	12	57	78	0	12	8	0.95
478956--479417	51	8.9	51	90	4	656	29	15	25	28	1.96
479272--479495	55	4.1	56	80	7	228	28	15	23	33	1.95
479272--479495	111	2.0	110	81	9	260	28	15	23	33	1.95
483845--483887	17	2.5	17	85	10	61	67	0	0	32	0.91
484194--484263	25	2.8	25	97	0	131	34	7	7	51	1.57
484945--484996	20	2.6	20	96	0	95	38	26	13	21	1.90
485052--485244	60	3.2	60	84	0	251	35	25	19	19	1.96
485052--485244	20	9.6	20	80	5	210	35	25	19	19	1.96
485623--485691	32	2.2	32	91	0	111	11	21	20	46	1.82
485623--485672	18	3.0	18	69	22	54	12	22	22	44	1.85
485815--485869	14	3.6	14	73	21	56	41	23	25	9	1.83
485815--485885	33	2.2	33	94	0	124	43	25	22	8	1.81
485881--485978	19	5.7	19	70	22	81	10	24	22	42	1.84
485903--485992	14	5.7	14	74	23	81	8	25	23	42	1.83
485886--486000	33	3.5	33	95	0	212	9	24	20	45	1.81
487693--488347	93	7.1	93	98	1	1266	21	12	18	46	1.83
487693--488347	183	3.5	186	98	1	1266	21	12	18	46	1.83
487693--488347	276	2.4	277	98	0	1278	21	12	18	46	1.83
488391--488519	19	7.3	19	75	17	125	45	28	17	8	1.77
488427--488519	33	2.8	32	91	4	150	46	27	18	7	1.76
488391--488519	52	2.5	52	74	14	140	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488515--488648	19	7.6	19	76	15	119	11	18	23	45	1.83
488537--488592	14	3.7	14	78	17	58	12	19	23	44	1.84
488520--488611	32	2.8	33	90	3	150	11	19	21	46	1.82
490549--490584	14	2.6	14	95	0	63	33	0	22	44	1.53
490690--490791	19	5.6	19	84	13	151	44	17	23	14	1.86
490820--491106	19	16.4	19	78	17	329	13	20	18	46	1.83
490798--491074	52	5.3	49	90	8	303	14	21	17	46	1.84
490820--491106	71	4.1	71	82	14	357	13	20	18	46	1.83
493389--493413	12	2.1	12	100	0	50	0	28	0	72	0.86
493588--493632	24	2.0	24	86	8	67	40	22	13	24	1.90
494314--494682	20	18.5	20	86	4	458	20	18	26	34	1.96
496788--496816	2	14.5	2	100	0	58	48	0	0	51	1.00
502750--502810	17	3.6	17	73	20	56	14	19	9	55	1.67
502750--502799	17	2.9	17	82	5	57	16	18	12	54	1.72
502209--502840	333	1.9	331	90	1	1016	26	17	7	48	1.73
502961--503148	65	2.9	63	84	4	223	34	20	11	34	1.88
503115--503186	35	2.1	35	100	0	144	33	22	18	26	1.96
503053--503241	100	1.9	100	88	0	288	34	22	13	29	1.93
502985--503305	165	1.9	165	89	0	489	34	21	13	30	1.92
503150--503305	65	2.4	65	89	0	231	34	22	13	29	1.92
505302--505345	18	2.4	18	81	7	54	50	27	4	18	1.66
510739--511129	132	3.0	132	95	2	711	21	19	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512779--512835	30	1.9	29	89	10	89	38	12	0	49	1.41
515695--515780	41	2.0	43	91	6	140	29	11	19	39	1.87
515753--515796	20	2.3	20	85	11	58	29	11	9	50	1.69

Tables:   1   2   3

The End!