genome.fa.s9069.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009069.1 Hibiscus syriacus cultivar Beakdansim tig00112496_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  530156

Tables:   1   2   3   

This is table  2  of  3  ( 331 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244151--244235	36	2.4	36	84	4	118	78	0	12	8	0.95
244154--244206	26	2.1	26	96	3	99	79	0	9	11	0.94
244176--244245	29	2.4	29	80	2	79	77	1	14	7	1.05
245245--245562	55	5.8	55	85	3	390	33	15	20	29	1.94
245892--245935	2	22.0	2	100	0	88	50	0	0	50	1.00
248757--248801	23	2.0	23	81	0	54	22	15	13	48	1.79
249071--249101	16	1.9	16	100	0	62	25	12	9	51	1.70
263480--263508	2	14.5	2	100	0	58	51	0	0	48	1.00
267305--267336	2	16.0	2	93	0	55	0	53	0	46	1.00
267922--267947	3	8.7	3	100	0	52	0	0	30	69	0.89
271314--271353	19	2.1	19	100	0	80	25	15	20	40	1.90
271682--271713	12	2.5	13	95	5	57	59	3	0	37	1.13
275027--275117	32	2.9	32	83	1	112	52	5	2	39	1.37
277072--277193	61	2.0	61	96	0	226	23	15	25	35	1.94
279880--280199	159	2.0	159	97	0	604	36	11	15	36	1.84
280365--280418	16	3.2	17	86	5	56	48	5	3	42	1.44
280376--280428	2	26.0	2	81	11	63	50	1	1	45	1.23
280421--280529	49	2.2	50	80	9	136	51	9	6	33	1.59
280524--280563	21	1.9	21	94	0	71	57	27	0	15	1.38
280949--280985	15	2.4	15	95	4	65	51	5	2	40	1.39
281060--281089	7	4.3	7	91	0	51	50	36	0	13	1.42
281060--281112	14	3.9	14	75	5	54	47	32	0	20	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280402--282192	560	3.3	536	91	4	2840	43	12	8	35	1.72
281481--281517	15	2.4	15	86	4	56	48	8	2	40	1.47
281592--281676	14	6.1	14	81	2	73	49	28	1	21	1.57
281632--281672	7	5.9	7	78	21	50	56	29	0	14	1.39
282043--282079	15	2.4	15	95	4	65	51	5	2	40	1.39
282154--282183	7	4.3	7	91	0	51	50	36	0	13	1.42
282068--282171	49	2.1	49	80	3	111	51	12	4	30	1.60
282195--282235	16	2.6	16	100	0	82	39	14	29	17	1.89
282286--282406	64	1.9	64	81	11	149	18	21	28	31	1.97
286824--286864	17	2.4	18	80	8	50	53	0	2	43	1.13
303149--303173	11	2.3	11	100	0	50	56	0	0	44	0.99
304146--304180	17	2.1	17	89	5	54	37	0	2	60	1.12
304146--304194	25	1.9	26	83	4	64	36	2	2	59	1.21
308681--308724	17	2.6	18	85	7	56	34	4	0	61	1.16
309263--309345	35	2.3	37	84	14	102	44	6	6	43	1.53
309282--309482	34	6.1	34	71	13	143	44	3	7	43	1.50
309385--309448	30	2.2	30	86	8	87	42	3	6	48	1.44
309524--309553	15	2.0	15	93	0	51	26	0	3	70	1.03
309522--309572	18	2.8	17	82	14	50	23	5	1	68	1.22
312520--312562	18	2.4	18	92	3	70	11	13	9	65	1.48
316171--316745	84	6.9	85	81	4	681	28	26	22	22	1.99
315888--316638	247	3.0	249	88	3	1033	28	26	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315888--316768	164	5.4	163	89	4	951	28	26	22	22	1.99
316205--316852	164	3.9	160	88	4	800	29	24	21	23	1.99
316179--316851	328	2.0	330	86	4	935	29	24	21	23	1.99
317621--317680	28	2.1	28	84	9	77	43	3	6	46	1.46
317517--317755	131	1.8	132	79	9	283	45	3	7	43	1.49
317763--317792	15	2.0	15	93	0	51	26	0	3	70	1.03
317761--317811	18	2.8	17	82	14	50	23	5	1	68	1.22
319445--319476	15	2.0	17	88	11	50	31	12	6	50	1.65
326486--326543	29	2.0	29	100	0	116	13	10	17	58	1.62
328578--328607	2	15.0	2	100	0	60	50	0	0	50	1.00
333669--334499	120	7.0	120	82	3	935	22	24	16	35	1.95
336051--336084	14	2.3	15	90	5	52	41	14	11	32	1.82
340265--340359	49	2.0	48	85	4	129	48	9	12	29	1.73
340281--340374	49	1.9	49	88	0	143	43	10	17	28	1.82
341149--341214	29	2.3	29	94	0	114	40	19	9	30	1.83
341160--341254	29	3.2	29	84	1	109	40	24	6	29	1.80
341804--341955	67	2.2	70	80	8	177	35	5	15	43	1.71
341964--342027	29	2.2	29	88	0	92	43	9	10	35	1.72
352418--352475	22	2.7	22	78	2	64	51	6	1	39	1.39
353473--353532	2	30.0	2	100	0	120	50	0	0	50	1.00
354051--354075	3	8.3	3	100	0	50	32	0	32	36	1.58
356226--356269	15	2.8	16	79	10	54	43	0	2	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357539--357585	13	3.6	13	82	8	51	23	2	4	70	1.16
357626--357656	2	15.5	2	93	0	53	45	0	3	51	1.17
361805--361887	43	1.9	43	87	0	121	31	30	16	21	1.96
363333--363380	18	2.7	18	80	0	60	35	35	12	16	1.87
364179--364321	65	2.2	63	84	8	182	25	23	17	32	1.96
364180--364340	65	2.5	65	80	8	168	26	23	16	32	1.96
365164--365246	32	2.6	32	88	0	121	31	25	20	22	1.98
365164--365407	114	2.1	115	85	7	329	31	25	18	24	1.98
365664--365914	36	7.2	36	75	12	220	29	19	9	41	1.84
365807--365906	33	2.9	33	74	11	94	25	21	10	44	1.83
365665--366077	134	3.1	133	86	2	583	30	18	9	41	1.82
366033--366105	29	2.5	29	93	0	128	34	19	6	39	1.78
366073--366274	68	3.0	67	76	8	203	30	18	11	39	1.86
366075--366251	67	2.6	68	80	7	189	30	18	11	39	1.86
367032--367074	2	22.0	2	95	4	79	48	0	0	51	1.00
376708--376747	9	4.1	10	87	12	57	32	0	2	65	1.06
376714--376746	16	2.1	16	88	11	50	30	0	0	69	0.88
378064--378137	3	25.7	3	70	20	52	31	0	2	66	1.06
378044--378101	5	10.8	5	78	10	53	24	1	1	72	1.03
378035--378099	28	2.4	26	85	10	85	26	3	1	69	1.12
378035--378135	11	8.9	11	72	19	75	27	1	2	67	1.16
384088--384126	14	2.7	14	84	4	51	58	5	2	33	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386627--386684	31	1.9	31	92	3	100	31	6	24	37	1.82
387319--387391	14	5.3	14	70	8	60	50	2	1	45	1.24
387318--387391	28	2.7	28	77	6	80	50	4	1	44	1.29
387349--387417	32	2.2	30	80	15	77	47	0	1	50	1.09
394053--394204	67	2.2	68	90	1	234	27	28	26	17	1.98
394506--394577	29	2.5	29	95	0	126	40	9	11	38	1.74
394752--395047	149	2.0	149	99	0	583	27	15	19	36	1.93
395028--395072	23	2.0	23	86	0	63	20	24	28	26	1.99
401106--401148	21	2.0	21	81	0	50	30	30	25	13	1.94
401128--401278	67	2.3	67	90	0	230	27	28	25	18	1.98
401242--401279	20	1.9	20	88	0	58	23	34	31	10	1.89
401578--401649	29	2.5	29	95	0	126	40	9	11	38	1.74
402098--402142	23	2.0	23	86	0	63	20	24	28	26	1.99
403475--403534	20	2.8	21	90	7	86	21	33	23	21	1.97
403517--403556	21	1.9	21	89	0	62	25	40	25	10	1.86
406970--407021	24	2.2	24	83	16	74	55	3	0	40	1.18
407054--407125	28	2.6	28	73	6	76	48	1	1	48	1.18
407436--407476	21	2.0	21	95	0	73	41	0	17	41	1.49
407847--407936	28	3.3	28	72	7	78	50	1	1	47	1.15
407876--407944	30	2.3	31	82	9	81	49	0	1	49	1.09
408045--408488	200	2.2	199	85	3	608	39	14	15	30	1.87
408592--408648	23	2.5	23	85	5	80	36	15	3	43	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413703--413867	78	2.1	79	96	1	305	43	19	12	24	1.86
415150--415198	21	2.4	21	86	3	64	40	16	22	20	1.91
415208--415280	21	3.5	21	74	10	69	23	20	17	38	1.93
415270--415381	20	5.6	20	81	4	127	38	20	19	21	1.94
415126--415389	41	6.5	41	69	11	139	33	20	17	28	1.95
415555--415625	21	3.4	21	71	11	65	23	21	15	39	1.91
415617--415728	20	5.6	20	84	4	136	37	20	20	21	1.94
415617--415710	41	2.3	41	88	1	136	39	19	21	20	1.93
416272--416383	20	6.1	19	77	14	117	13	22	18	45	1.84
416277--416375	33	2.7	39	86	10	129	13	22	20	44	1.85

Tables:   1   2   3