genome.fa.s907.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000907.1 Hibiscus syriacus cultivar Beakdansim tig00001799_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  656280

Tables:   1   2   3   4   

This is table  1  of  4  ( 425 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308--353	20	2.3	20	86	13	69	54	10	17	17	1.70
2568--2630	21	3.0	21	79	6	65	39	15	28	15	1.89
2664--2724	32	1.9	32	89	0	95	29	0	47	22	1.52
4510--4558	19	2.6	19	93	0	80	30	2	10	57	1.43
4680--6233	198	7.9	199	98	1	2990	36	16	16	30	1.91
4680--6233	394	3.9	397	97	1	2970	36	16	16	30	1.91
4680--6233	789	2.0	790	97	1	2978	36	16	16	30	1.91
7701--7775	3	25.0	3	79	0	78	34	5	34	25	1.79
8973--9663	181	3.8	183	95	1	1205	36	14	16	33	1.89
9659--9701	22	1.9	23	85	4	61	30	11	11	46	1.76
12826--12888	22	2.8	23	87	4	92	36	6	20	36	1.78
12826--12897	23	3.2	23	88	4	101	34	5	20	38	1.76
13256--13308	20	2.7	20	87	0	79	32	7	22	37	1.82
13256--13322	20	3.3	20	81	10	73	31	5	22	40	1.78
13584--13634	25	2.0	25	92	0	84	33	7	19	39	1.81
13883--13919	18	2.1	18	89	0	56	32	5	10	51	1.60
14175--14339	39	4.2	39	98	0	312	48	20	13	17	1.80
14743--14806	23	2.8	23	87	0	92	35	6	20	37	1.78
14743--14815	23	3.2	23	82	7	85	34	5	20	39	1.76
15425--15498	17	5.3	14	81	18	68	32	0	1	66	1.00
15431--15493	3	22.0	3	81	15	80	34	0	1	63	1.04
15431--15493	20	3.0	21	84	11	85	34	0	1	63	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15696--15723	2	14.0	2	100	0	56	50	0	0	50	1.00
18883--18942	21	3.2	21	65	30	62	43	20	5	31	1.73
18849--18977	35	3.7	36	85	7	167	42	17	6	33	1.76
19082--19138	27	2.1	27	100	0	114	26	17	19	36	1.94
23076--23105	10	3.0	10	95	0	51	53	0	16	30	1.44
23503--23610	35	3.0	36	89	4	155	45	19	5	29	1.73
28925--28977	14	3.8	14	89	0	88	16	18	11	52	1.73
28925--28978	28	1.9	28	96	0	99	16	18	11	53	1.72
33684--33736	14	3.8	14	85	9	81	16	15	11	56	1.67
41606--41681	31	2.5	31	91	0	125	46	15	11	26	1.81
49831--49903	29	2.5	30	90	2	112	36	1	4	57	1.26
50162--50202	19	2.3	19	83	8	50	24	7	9	58	1.55
54859--54902	23	2.0	22	87	12	65	54	11	34	0	1.36
56124--56168	3	15.3	3	95	4	83	33	0	0	66	0.92
58045--58095	24	2.0	25	85	7	68	31	3	0	64	1.11
59915--59974	29	2.0	30	90	6	95	33	5	16	45	1.69
60054--60154	21	4.8	21	80	13	111	22	35	18	22	1.96
60173--60240	20	3.3	20	77	4	82	17	26	26	29	1.98
60349--60388	20	1.9	22	90	10	66	37	40	10	12	1.77
62841--62909	30	2.2	30	85	15	95	34	5	17	42	1.73
62850--62909	30	2.0	30	93	6	104	33	6	16	43	1.74
62989--63087	21	4.8	20	81	10	119	23	35	19	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63108--63181	20	3.7	20	78	7	78	20	27	22	29	1.98
63108--63190	41	2.0	41	86	9	116	21	26	24	27	1.99
63294--63333	20	1.9	22	90	10	66	37	40	10	12	1.77
68718--68772	18	3.0	18	73	5	56	29	0	3	67	1.08
71248--71613	177	2.1	177	96	1	671	47	6	8	38	1.58
72151--72186	12	3.0	12	100	0	72	58	0	0	41	0.98
73293--73337	18	2.5	17	79	10	54	60	4	0	35	1.17
74521--74558	20	1.9	20	94	0	67	26	23	28	21	1.99
74862--74888	12	2.2	12	100	0	54	40	7	7	44	1.60
74855--74891	12	2.8	14	80	16	51	43	5	5	45	1.49
76808--76880	23	3.3	22	78	7	85	28	21	21	27	1.99
82143--82278	65	2.1	64	86	4	184	30	18	22	29	1.97
89572--89622	20	2.5	20	78	12	59	76	0	13	9	1.02
89596--89623	14	2.0	14	100	0	56	78	0	21	0	0.75
89758--89792	14	2.5	14	95	0	61	60	17	0	22	1.37
90064--90184	57	2.1	57	96	1	226	45	17	14	23	1.84
92976--93131	6	26.0	6	99	0	276	52	0	14	33	1.41
100277--100395	42	2.8	42	89	1	166	36	16	15	31	1.91
103423--103516	42	2.3	41	77	15	113	47	0	0	52	1.00
103824--103943	43	2.8	43	79	10	138	43	16	19	20	1.88
103820--103958	43	3.3	43	79	8	133	45	18	17	18	1.86
104933--104991	31	1.9	31	89	0	91	42	6	8	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105018--105066	22	2.2	22	85	3	62	55	10	2	32	1.45
105072--105145	22	3.2	22	70	22	62	55	14	0	29	1.40
105118--105223	32	3.6	31	75	22	113	52	11	0	35	1.37
105149--105191	22	2.0	22	95	0	77	51	11	0	37	1.39
105151--105199	22	2.2	22	85	3	62	55	12	0	32	1.37
105101--105269	54	3.1	54	94	1	295	52	10	0	36	1.36
105203--105245	22	2.0	22	100	0	86	51	13	0	34	1.42
105248--105329	15	5.5	15	95	0	146	52	0	0	47	1.00
110394--110480	42	2.1	42	95	0	156	16	17	21	44	1.86
110673--110735	24	2.6	24	78	19	60	50	0	1	47	1.10
110690--110750	22	2.8	23	82	7	65	45	0	1	52	1.10
110701--110779	31	2.5	31	80	17	83	46	1	1	50	1.17
110764--110864	28	3.5	29	82	12	109	44	0	1	53	1.11
110881--111050	90	1.9	86	81	9	200	50	4	0	45	1.21
117762--117840	39	2.0	39	97	0	149	34	0	15	50	1.44
122708--122788	39	2.1	39	90	4	128	34	2	12	50	1.53
132914--132966	24	2.2	24	96	0	97	32	16	9	41	1.81
135776--135829	17	3.4	15	76	14	54	62	1	0	35	1.06
135783--135829	17	2.9	16	81	15	60	61	0	0	38	0.96
135783--135831	16	3.1	16	75	18	50	59	0	0	40	0.98
139096--139185	29	3.2	29	81	9	123	25	1	38	34	1.63
139131--139184	24	2.3	22	76	17	54	27	1	38	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144682--144719	20	1.9	20	88	0	58	21	26	10	42	1.85
144933--145090	23	6.5	23	68	14	84	56	17	12	13	1.66
144973--145037	30	2.2	30	80	2	78	56	16	12	13	1.66
145023--145138	10	11.2	10	67	18	51	59	15	10	14	1.61
144933--145084	77	2.0	77	97	2	288	56	16	13	13	1.67
145780--145805	2	13.0	2	100	0	52	50	0	50	0	1.00
147657--147966	143	2.2	141	84	8	396	46	7	7	39	1.59
148025--148074	22	2.4	21	78	18	52	66	6	0	28	1.15
149511--149587	3	25.0	3	79	12	77	64	0	2	32	1.07
149511--149581	23	3.1	23	84	11	94	64	0	1	33	1.02
149519--149588	19	3.7	19	80	12	74	65	0	2	31	1.07
158380--158450	35	2.1	34	82	10	83	39	1	4	54	1.28
158631--158669	18	2.2	18	90	9	62	33	15	5	46	1.68
160541--160592	20	2.5	22	82	14	67	28	15	28	26	1.96
160616--160653	19	2.0	20	89	5	60	31	18	23	26	1.97
161209--161276	21	3.2	21	73	19	68	23	11	26	38	1.89
167304--167383	42	2.0	40	87	5	115	26	13	27	32	1.94
167312--167384	20	3.5	20	74	10	67	26	16	26	31	1.96
167480--167533	20	2.6	21	82	5	65	20	22	29	27	1.98
168042--168090	21	2.3	21	85	0	62	22	16	28	32	1.95
175820--175869	24	2.0	26	88	7	77	62	2	14	22	1.42
177615--177701	44	2.0	44	88	4	131	26	13	18	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178034--178075	18	2.3	18	80	11	50	30	7	0	61	1.22
178036--178076	19	2.2	19	86	4	57	29	7	0	63	1.21
180270--180333	27	2.4	27	100	0	128	43	17	12	26	1.84
180380--180414	16	2.2	16	94	0	61	34	20	14	31	1.92
180386--180426	16	2.6	16	88	3	57	29	21	12	36	1.90
183666--183758	20	4.6	20	79	2	105	41	22	20	15	1.89
187353--187378	6	4.3	6	100	0	52	15	34	30	19	1.93
190423--190466	17	2.4	18	81	11	54	45	0	0	54	0.99
190514--190573	17	3.4	17	73	17	52	51	0	1	46	1.10
190894--190949	29	1.9	29	88	0	85	37	8	8	44	1.67

Tables:   1   2   3   4