genome.fa.s907.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000907.1 Hibiscus syriacus cultivar Beakdansim tig00001799_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  656280

Tables:   1   2   3   4   

This is table  4  of  4  ( 425 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559340--559381	20	2.2	20	91	4	68	23	16	4	54	1.61
565419--565714	81	3.7	79	74	13	250	31	18	17	32	1.94
565580--565735	81	1.9	81	81	5	190	30	19	18	31	1.96
572382--572435	3	18.0	3	92	0	90	62	0	3	33	1.12
573443--573559	58	2.0	59	86	1	164	36	14	13	35	1.86
574552--574654	38	2.7	38	79	10	120	48	0	0	51	1.00
574697--574778	36	2.3	35	81	6	101	18	40	12	29	1.87
583276--583322	15	3.1	16	77	20	55	42	0	23	34	1.54
584000--584029	2	15.0	2	92	0	51	50	3	0	46	1.18
583996--584028	10	3.3	10	95	0	57	51	6	0	42	1.26
584938--585514	182	3.2	180	88	4	842	29	15	12	42	1.84
586520--586562	15	2.6	17	82	14	54	55	0	2	41	1.12
586364--587352	324	3.0	325	88	6	1376	43	7	4	43	1.55
587382--587413	16	2.0	16	93	0	55	46	0	0	53	1.00
589529--589601	25	3.0	24	73	16	69	76	5	2	15	1.08
589519--589616	50	1.9	51	83	6	128	75	7	4	13	1.15
589658--589863	3	69.7	3	72	17	105	63	2	4	29	1.28
589673--589855	94	1.9	94	88	7	278	62	2	5	29	1.32
589770--589899	60	2.2	60	82	10	142	65	2	2	30	1.17
591527--591575	6	8.2	6	80	17	57	2	12	2	83	0.82
591527--591575	24	2.0	24	92	0	80	2	12	2	83	0.82
594138--594250	3	37.7	3	76	13	74	66	1	3	28	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
594068--594244	97	1.9	95	86	11	238	64	2	5	27	1.30
595457--595502	2	24.0	2	80	8	51	43	0	4	52	1.21
595457--595527	36	2.0	36	83	5	90	43	2	5	47	1.41
598776--598870	21	4.6	21	66	8	52	33	25	18	22	1.97
598858--598910	20	2.7	20	79	5	63	45	22	16	15	1.85
598919--599132	20	10.6	20	81	6	252	36	25	19	18	1.94
598919--599130	41	5.2	41	93	1	356	37	25	18	18	1.94
599690--599761	20	3.6	19	84	5	90	51	19	16	12	1.76
599788--599900	20	6.1	19	76	13	101	13	23	20	43	1.86
603339--603374	14	2.6	14	95	0	63	33	0	22	44	1.53
603481--603579	19	5.7	19	67	24	67	48	21	18	12	1.80
603481--603572	33	2.8	33	86	3	123	48	21	17	11	1.79
603591--603682	33	2.8	33	91	0	139	14	21	17	46	1.83
603622--603736	19	6.5	19	71	20	106	15	22	18	43	1.87
603622--603735	53	2.2	52	88	1	165	15	22	18	42	1.88
603676--603769	33	2.8	34	80	3	118	17	22	20	40	1.91
603742--603815	20	3.7	20	66	16	53	25	17	24	32	1.97
606272--606331	24	2.5	24	86	0	93	38	18	16	26	1.92
607188--607239	20	2.6	20	93	0	86	36	15	21	26	1.93
607188--607274	20	4.4	20	81	5	81	32	18	21	27	1.97
607259--607313	21	2.6	21	94	0	92	36	20	25	18	1.94
608888--608915	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609206--609245	20	2.0	20	90	0	62	22	5	35	37	1.76
618314--618351	13	2.7	14	84	12	51	73	2	21	2	1.07
622408--622450	18	2.3	19	84	4	52	30	27	4	37	1.77
625797--625830	2	17.0	2	100	0	68	50	0	0	50	1.00
627506--627582	23	3.3	23	74	1	73	46	14	14	24	1.81
636249--636305	13	4.4	13	86	4	71	35	14	19	31	1.91
636701--636774	20	3.7	19	70	18	53	62	1	5	31	1.26
639816--639858	20	2.3	20	88	11	65	72	2	6	18	1.19
639830--639859	15	2.1	15	93	6	53	76	0	6	16	0.99
639834--639926	32	2.8	30	72	27	73	63	9	3	23	1.39
643200--643253	24	2.3	24	87	3	74	29	11	33	25	1.91
645254--645282	14	2.0	15	93	6	51	75	3	0	20	0.94
645955--646014	28	2.2	28	85	8	79	40	5	0	55	1.22
646710--646757	23	2.1	23	84	0	60	12	25	45	16	1.82
646719--646764	23	2.0	23	86	0	65	8	28	47	15	1.74
651328--651521	99	2.0	99	87	3	286	33	17	17	31	1.93
652706--653642	83	11.3	83	83	3	1091	35	19	18	26	1.95
652741--653656	251	3.7	249	86	3	1156	35	19	18	26	1.95
654454--654504	3	16.7	3	95	4	93	35	0	0	64	0.94
655262--655327	29	2.3	29	97	0	123	33	16	28	21	1.95
656024--656064	15	2.6	16	88	11	59	31	4	2	60	1.30

Tables:   1   2   3   4

The End!