genome.fa.s9078.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009078.1 Hibiscus syriacus cultivar Beakdansim tig00112517_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  829977

Tables:   1   2   3   4   

This is table  2  of  4  ( 393 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217397--217444	23	2.1	23	92	0	78	37	6	16	39	1.74
218077--218534	182	2.5	182	90	1	711	27	14	13	44	1.83
218403--218979	112	5.1	113	90	0	872	25	13	13	47	1.79
218403--218979	225	2.6	225	90	1	906	25	13	13	47	1.79
225512--225599	46	1.9	46	92	0	149	45	12	15	26	1.82
230215--230257	16	2.8	16	89	3	61	41	9	18	30	1.82
231945--231969	6	4.2	6	100	0	50	16	52	32	0	1.44
233880--234278	199	2.0	197	89	4	606	19	20	16	43	1.88
240717--240742	2	13.0	2	100	0	52	50	0	0	50	1.00
242460--242485	11	2.4	11	100	0	52	65	0	0	34	0.93
247497--247538	22	1.9	22	90	0	66	71	2	2	23	1.10
249386--249437	9	6.1	9	76	13	56	34	0	1	63	1.06
249379--249435	16	3.5	16	88	4	78	35	0	1	63	1.05
251663--251706	13	3.4	13	80	0	52	18	0	11	70	1.16
263368--263436	20	3.4	21	71	18	58	46	1	1	50	1.19
263410--263456	18	2.5	20	78	21	57	44	0	2	53	1.12
263373--263429	29	1.9	30	86	10	82	47	1	0	50	1.11
263413--263497	20	4.4	18	76	15	57	43	0	2	54	1.13
263419--263493	20	3.8	19	73	13	64	44	0	2	53	1.14
268565--268871	153	2.0	153	99	0	605	33	23	18	25	1.97
270140--270253	57	2.0	57	100	0	228	52	12	24	10	1.70
272873--272954	31	2.7	31	84	3	96	53	1	13	31	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275619--275643	12	2.1	12	100	0	50	56	12	0	32	1.36
279956--280016	30	2.0	31	90	3	97	55	4	8	31	1.50
285253--285294	19	2.2	19	83	8	50	54	9	11	23	1.66
287410--287486	31	2.5	31	86	0	109	25	15	15	42	1.86
287470--287543	29	2.5	30	80	4	78	29	16	8	45	1.76
287990--288126	33	4.2	32	75	12	102	73	1	5	18	1.11
287989--288116	66	2.0	64	83	7	159	73	0	5	20	1.08
288056--288095	18	2.4	17	87	8	55	80	2	0	17	0.83
287990--288126	34	4.2	31	76	14	107	73	1	5	18	1.11
289362--289401	17	2.4	17	84	15	57	70	0	7	22	1.12
289413--289739	37	8.8	37	83	7	340	48	7	1	43	1.41
289449--289510	21	3.1	22	68	25	57	56	4	0	38	1.21
289540--289639	13	8.0	13	65	19	61	47	7	0	46	1.30
289701--289759	24	2.5	24	91	2	93	44	8	3	44	1.51
289665--289795	60	2.1	61	80	8	142	47	7	1	43	1.41
289732--289820	35	2.6	34	82	12	110	48	8	2	40	1.47
290053--290101	19	2.5	19	83	3	53	44	4	0	51	1.20
290607--290673	33	2.0	33	100	0	134	31	2	23	41	1.70
291082--291108	13	2.1	13	100	0	54	62	7	0	29	1.22
293809--293918	53	2.1	53	92	0	184	45	12	12	29	1.79
295064--295273	65	3.2	64	74	15	166	27	18	22	31	1.97
298113--298184	35	2.1	35	100	0	144	47	27	8	16	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301204--301314	55	2.0	56	98	1	215	23	26	10	39	1.87
301840--301879	21	1.9	21	89	0	62	37	7	2	52	1.43
303947--303995	19	2.7	17	84	9	53	26	20	28	24	1.99
303966--304071	45	2.3	45	87	4	142	29	20	20	29	1.98
304012--304157	65	2.3	63	81	11	163	25	18	23	32	1.97
316440--316538	20	5.4	20	64	31	69	31	4	18	46	1.67
316432--316585	35	4.3	37	87	7	212	33	3	18	44	1.68
320996--321073	36	2.2	36	90	2	122	34	2	20	42	1.66
324075--324106	16	2.0	17	88	11	50	18	6	0	75	1.01
325847--325898	24	2.2	24	89	0	77	0	38	0	61	0.96
325859--325915	18	3.1	18	76	2	60	0	38	3	57	1.16
325865--325898	12	2.8	12	81	0	50	0	38	0	61	0.96
327463--327536	29	2.6	28	93	6	132	36	10	14	37	1.82
327463--327536	28	2.6	29	91	4	125	36	10	14	37	1.82
327979--328030	9	6.1	9	76	13	56	32	1	1	63	1.16
327978--328027	17	3.0	17	91	2	75	34	2	4	60	1.27
327987--328032	16	2.9	16	87	6	58	30	2	2	65	1.16
329279--329488	65	3.3	63	77	11	194	26	16	23	33	1.96
329942--329992	2	25.5	2	100	0	102	50	0	0	49	1.00
337609--337818	65	3.2	64	76	9	203	27	16	24	31	1.96
339455--339572	47	2.6	47	85	6	136	24	28	23	22	1.99
339480--339572	47	2.0	44	91	6	150	26	26	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340149--340183	18	2.0	17	94	5	61	22	45	11	20	1.82
344731--344762	10	3.1	10	95	4	55	87	0	3	9	0.64
346776--347031	43	6.0	43	93	1	426	26	13	32	27	1.94
347068--347181	42	2.7	41	78	6	122	26	20	22	30	1.98
347750--347814	20	3.3	19	68	23	53	41	12	21	24	1.87
348566--348599	11	3.1	11	95	0	59	79	8	8	2	1.03
361758--361803	22	2.1	21	84	4	56	34	30	13	21	1.91
361980--362045	31	2.2	30	86	2	87	34	25	1	37	1.66
362445--362487	21	2.0	21	86	0	59	16	25	27	30	1.97
368962--369040	31	2.6	30	86	6	97	36	22	2	37	1.68
369451--369493	21	2.0	21	86	0	59	13	25	27	32	1.94
370544--370601	26	2.1	28	84	9	84	44	3	5	46	1.42
370551--370602	26	2.0	27	92	3	88	48	1	5	44	1.38
370967--371108	46	3.1	46	67	18	141	46	0	7	45	1.37
372702--372779	33	2.3	34	74	12	81	62	0	0	37	0.95
373200--373236	19	1.9	19	88	0	56	43	2	2	51	1.30
374351--374377	8	3.4	8	100	0	54	44	0	0	55	0.99
375506--375639	6	24.3	6	75	17	67	50	0	0	50	1.00
375506--375640	38	3.4	38	82	10	146	50	0	0	49	1.00
375523--375646	48	2.7	48	90	5	184	50	0	0	49	1.00
375704--375786	36	2.3	36	81	4	96	16	38	13	31	1.87
382802--382907	50	2.1	51	96	3	198	32	17	15	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384512--384547	2	18.0	2	100	0	72	0	50	0	50	1.00
385939--385979	14	2.9	14	88	0	55	56	0	2	41	1.13
393768--393793	12	2.2	12	100	0	52	23	42	34	0	1.54
396773--396807	2	17.5	2	93	0	61	45	0	2	51	1.16
397041--397096	9	5.7	9	75	22	51	8	8	0	82	0.86
400131--400165	14	2.4	14	90	4	52	34	0	2	62	1.10
404997--405032	15	2.4	15	86	13	56	8	11	13	66	1.44
407999--408028	6	5.0	6	100	0	60	16	0	33	50	1.46
417067--417291	43	5.3	43	87	3	285	24	18	24	33	1.96
417067--417291	85	2.6	84	85	4	297	24	18	24	33	1.96
417184--417253	22	3.2	22	62	18	56	20	14	24	41	1.89
422275--422360	44	2.0	42	86	4	118	31	18	18	31	1.95
423832--423923	40	2.2	41	83	7	107	38	22	14	25	1.92
427560--427608	24	2.1	23	84	3	62	44	2	0	53	1.12
427698--427734	18	2.1	18	89	0	56	64	0	0	35	0.94
428208--428279	15	4.7	15	94	1	126	13	31	38	15	1.87
431695--431728	9	3.8	9	84	0	50	20	0	11	67	1.21
431703--431746	6	7.3	6	92	0	52	11	0	20	68	1.20
431700--431734	18	1.9	18	94	0	61	17	0	14	68	1.21
440745--440785	3	14.0	3	80	14	50	36	0	0	63	0.95
441846--441871	2	13.0	2	100	0	52	50	0	0	50	1.00
452080--452249	54	3.1	54	93	0	277	40	15	20	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452613--452667	22	2.5	22	90	0	92	34	12	14	38	1.84
453070--453738	113	6.0	113	89	3	940	38	13	18	29	1.89
454144--454858	76	9.4	76	97	0	1297	22	20	21	35	1.96
454988--455028	3	14.0	3	80	14	50	36	0	0	63	0.95
456440--456485	25	2.0	24	83	12	60	41	0	0	58	0.98
465989--466018	15	2.0	15	93	0	51	73	3	0	23	0.98
466902--466964	31	2.1	30	88	8	92	33	3	6	57	1.40
468680--469062	146	2.5	149	82	10	424	42	7	7	42	1.61
470471--470502	3	10.7	3	93	0	55	62	0	3	34	1.11
480678--480721	23	2.0	23	86	4	63	11	18	4	65	1.40

Tables:   1   2   3   4