Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009078.1 Hibiscus syriacus cultivar Beakdansim tig00112517_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  829977

Tables:   1   2   3   4   

This is table  4  of  4  ( 393 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
719183--719473
124
2.4
123
85
5
378
41
16
18
24
1.89
719612--719663
3
17.7
3
80
11
63
34
1
0
63
1.06
721013--721047
3
11.3
3
87
6
52
28
0
0
71
0.86
721015--721050
16
2.2
16
95
0
63
27
0
0
72
0.85
721048--721079
17
1.9
16
93
6
55
65
0
0
34
0.93
721320--721374
27
2.0
27
86
6
76
49
1
1
47
1.23
723690--723939
43
5.7
43
82
3
227
29
20
24
26
1.99
723727--723939
86
2.5
86
83
2
275
28
20
23
27
1.99
727519--727730
52
4.1
52
96
0
388
43
16
8
32
1.77
728821--728973
80
1.9
81
84
6
204
28
21
16
33
1.95
728822--728966
41
3.6
40
79
10
125
28
20
16
34
1.94
731982--732022
19
2.2
19
95
4
75
24
12
0
63
1.28
732463--732504
22
1.9
22
85
0
57
59
19
11
9
1.59
736159--736211
23
2.2
24
96
3
99
43
7
0
49
1.31
736324--736501
58
3.1
58
76
8
175
31
24
4
39
1.75
744193--744228
17
2.1
17
89
0
54
47
0
0
52
1.00
745054--745135
29
2.8
29
94
1
137
32
14
9
42
1.79
746419--746448
15
2.0
15
93
0
51
56
23
0
20
1.42
749806--749887
29
2.8
29
92
1
128
34
14
8
42
1.76
757257--757330
30
2.5
30
80
4
78
13
12
56
17
1.66
765989--766054
3
22.0
3
76
11
64
36
0
1
62
1.05
765983--766018
18
2.0
18
94
0
63
41
0
0
58
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
775150--775372
114
2.0
114
90
0
356
33
14
20
31
1.93
777322--777476
54
2.9
54
92
0
256
38
15
23
23
1.93
777843--777941
22
4.5
22
93
0
171
33
12
12
42
1.79
778615--779328
76
9.4
76
97
0
1297
23
19
22
34
1.97
779459--779526
3
22.0
3
82
5
82
38
0
1
60
1.06
780516--780560
21
2.1
21
87
0
63
31
28
24
15
1.96
784706--784750
21
2.1
21
87
0
63
31
28
24
15
1.96
788892--788936
21
2.1
21
87
0
63
31
28
24
15
1.96
808656--808773
60
2.0
60
91
0
191
33
6
41
17
1.76
820749--820847
33
3.0
32
88
4
144
44
16
7
32
1.74
829816--829858
21
2.0
21
86
0
59
25
11
30
32
1.91

Tables:   1   2   3   4

The End!