genome.fa.s9084.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009084.1 Hibiscus syriacus cultivar Beakdansim tig00112528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  881682

Tables:   1   2   3   4   

This is table  2  of  4  ( 448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167181--169914	979	2.8	979	94	1	4739	40	10	7	41	1.68
169539--169611	23	3.2	23	90	0	110	38	20	5	35	1.76
170492--170522	14	2.2	14	94	0	53	41	0	0	58	0.98
176536--176715	64	2.7	66	76	14	181	42	8	5	43	1.58
180920--181170	65	3.8	68	76	12	204	41	5	7	45	1.57
182675--182736	31	2.0	31	93	0	106	22	12	38	25	1.90
182741--182791	22	2.4	22	90	9	79	25	29	31	13	1.94
182838--182925	29	3.0	30	80	9	110	19	31	31	17	1.94
189657--189719	29	2.2	28	77	8	65	34	9	25	30	1.88
194738--194767	2	15.0	2	92	0	51	53	0	0	46	1.00
207769--207854	36	2.4	36	98	0	163	32	13	15	38	1.87
222781--222850	34	2.1	32	86	5	95	22	31	14	31	1.94
223133--223174	21	2.0	21	95	0	75	26	28	21	23	1.99
223287--223366	33	2.3	35	89	4	119	20	23	35	21	1.96
223336--223394	21	2.9	21	85	7	77	15	28	33	22	1.94
224453--224558	39	2.7	39	77	8	108	47	0	17	33	1.55
228390--228414	12	2.1	12	100	0	50	36	32	0	32	1.58
228489--228518	15	2.0	15	100	0	60	13	6	13	66	1.43
238447--238869	84	5.0	84	89	1	657	31	26	18	23	1.97
238447--238968	84	6.2	84	85	3	644	31	26	18	23	1.97
238447--238869	169	2.5	168	94	2	724	31	26	18	23	1.97
239309--239349	5	8.4	5	86	10	50	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239408--239483	33	2.3	33	90	2	116	38	15	14	31	1.88
242714--242754	3	13.7	3	90	10	66	70	0	0	29	0.87
243187--243229	21	2.0	22	81	4	52	30	25	16	27	1.97
244402--244435	17	2.0	17	88	0	50	32	5	0	61	1.20
253021--253058	20	1.9	20	88	0	58	31	10	2	55	1.48
256001--256109	3	36.3	3	100	0	218	33	66	0	0	0.92
263610--263683	23	3.2	23	76	5	78	60	18	10	9	1.56
267286--267391	19	5.6	19	90	3	144	30	32	20	16	1.95
267286--267391	37	2.8	38	87	5	144	30	32	20	16	1.95
279273--279306	16	2.1	16	94	0	59	32	8	26	32	1.87
283056--283102	21	2.2	22	80	7	60	29	27	27	14	1.96
283689--283723	18	1.9	18	88	11	54	54	5	17	22	1.64
284704--284770	22	3.0	22	97	0	125	19	25	26	28	1.99
287898--287944	21	2.2	22	80	7	60	29	27	27	14	1.96
288530--288564	18	1.9	18	88	11	54	54	5	17	22	1.64
289551--289617	22	3.0	22	100	0	134	19	26	26	26	1.99
291350--291411	30	2.0	31	87	3	90	38	16	16	29	1.90
292380--292453	21	3.5	21	90	0	112	28	28	21	21	1.99
296077--296110	16	2.1	16	94	0	59	32	8	26	32	1.87
305791--305854	12	5.6	12	75	16	55	76	1	3	18	1.00
305792--305848	5	10.4	5	82	16	53	77	1	1	19	0.95
305791--305845	17	3.2	17	78	12	60	78	1	1	18	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306446--306483	16	2.3	17	90	4	60	57	2	5	34	1.35
306884--306943	5	11.4	5	79	15	59	76	3	0	20	0.92
314830--314861	7	4.7	7	92	7	57	25	0	0	75	0.81
314830--314861	13	2.4	14	94	5	57	25	0	0	75	0.81
314829--314864	14	2.5	15	86	13	58	27	0	0	72	0.85
316126--316217	45	2.0	45	85	4	123	20	7	16	55	1.65
319262--319300	18	2.2	18	85	0	51	61	7	25	5	1.44
322679--322726	24	2.0	24	91	0	78	47	8	4	39	1.53
323493--323550	22	2.5	24	88	11	93	55	0	3	41	1.17
324882--324962	37	2.2	38	80	13	96	44	1	3	50	1.27
327015--327045	2	15.5	2	100	0	62	48	0	0	51	1.00
333786--333815	2	15.0	2	100	0	60	50	0	0	50	1.00
334257--334299	20	2.2	20	95	0	77	46	0	0	53	1.00
334384--334446	31	2.0	31	90	0	99	55	1	0	42	1.09
334573--334663	36	2.5	36	83	0	110	46	7	3	42	1.49
334642--334696	15	3.6	15	74	13	58	50	3	3	41	1.37
334670--334713	23	2.0	22	82	8	54	47	6	4	40	1.50
334676--334729	23	2.3	23	81	6	65	46	5	3	44	1.44
334700--334824	31	4.5	28	69	19	84	50	4	0	44	1.29
334830--334861	17	1.9	17	93	6	57	43	0	6	50	1.27
334909--334952	18	2.6	17	86	13	56	47	4	2	45	1.35
334971--335049	36	2.2	36	90	0	122	43	8	5	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335028--335078	15	3.3	15	74	15	59	50	1	3	43	1.31
335089--335136	21	2.3	21	88	0	69	45	6	6	41	1.54
335220--335380	52	2.9	54	82	7	200	41	9	7	40	1.66
335276--335309	13	2.5	13	90	4	50	41	2	8	47	1.50
335291--335335	20	2.3	20	84	3	65	42	8	4	44	1.56
335425--335465	16	2.4	17	88	12	66	48	4	0	46	1.23
335683--335755	21	3.5	21	74	14	62	47	2	1	47	1.24
335683--335731	17	2.9	18	76	11	50	46	2	0	51	1.12
335683--335739	19	3.0	19	78	14	55	49	1	0	49	1.11
335761--335841	13	5.9	13	81	8	90	37	6	8	48	1.59
335762--335841	28	2.9	26	83	10	106	37	6	8	47	1.60
335612--335805	85	2.3	84	82	6	237	42	5	4	47	1.46
335827--335878	18	2.9	18	76	15	54	42	0	5	51	1.25
336283--336316	11	3.1	11	91	0	50	52	14	2	29	1.56
345996--346038	22	2.0	22	95	0	77	9	23	46	20	1.79
346035--346113	10	8.3	9	74	10	59	30	27	26	15	1.96
346051--346113	19	3.3	18	77	4	63	33	28	23	14	1.94
352895--352949	18	2.7	21	86	13	71	36	5	23	34	1.78
353503--353606	33	3.2	33	79	4	104	45	33	8	12	1.73
355730--356588	128	6.7	128	95	0	1463	22	24	21	31	1.98
355731--356588	383	2.2	383	96	0	1565	22	24	21	31	1.98
356989--357088	33	3.0	34	82	2	130	39	2	4	55	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357610--357679	21	3.3	20	88	5	86	18	28	34	18	1.95
359449--359534	32	2.7	31	77	10	84	59	2	0	38	1.10
360577--360628	9	6.1	9	76	13	56	34	0	1	63	1.06
360570--360626	16	3.5	16	88	4	78	35	0	1	63	1.05
362824--362889	25	2.6	26	80	9	73	19	3	12	65	1.39
362850--362893	13	3.4	13	77	0	52	15	2	13	68	1.31
371946--371984	19	2.0	20	85	5	53	56	0	35	7	1.28
394424--394484	31	2.0	31	86	0	86	39	8	11	40	1.71
394981--395034	19	2.7	20	80	8	74	33	14	11	40	1.82
395804--395836	16	2.1	16	100	0	66	63	0	24	12	1.28
411861--411945	34	2.4	35	84	5	118	45	18	14	21	1.84
411862--411943	12	7.0	12	77	13	73	46	19	13	20	1.83
412812--412918	32	3.4	32	93	1	171	35	15	16	31	1.91
413376--413408	16	2.1	16	94	0	57	39	18	0	42	1.50
414764--414806	18	2.4	18	96	0	77	20	51	13	13	1.76
414786--414848	13	4.5	13	74	18	63	15	42	22	19	1.88
414768--414848	31	2.6	31	84	0	108	17	44	19	18	1.87
414803--414837	18	1.9	18	100	0	70	17	40	22	20	1.92
414835--414875	8	5.4	8	88	11	68	14	34	26	24	1.94
414838--414875	7	5.1	7	90	9	58	13	34	26	26	1.93
414838--414875	15	2.5	15	100	0	76	13	34	26	26	1.93
415979--416013	18	1.9	18	88	0	52	54	0	17	28	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419675--419717	18	2.4	18	96	0	77	20	51	13	13	1.76
419697--419757	13	4.3	13	73	18	59	16	42	21	19	1.89
419679--419757	31	2.5	31	83	0	104	17	44	18	18	1.87
419714--419748	18	1.9	18	100	0	70	17	40	22	20	1.92
419749--419785	7	5.1	7	93	6	65	13	32	27	27	1.94
419749--419785	15	2.5	15	95	4	67	13	32	27	27	1.94
420889--420923	18	1.9	18	88	0	52	54	0	17	28	1.43
429471--429529	3	19.7	3	92	0	100	32	1	0	66	1.02
429525--429565	15	2.9	14	89	7	64	60	0	0	39	0.96
429525--429565	14	2.9	15	92	7	68	60	0	0	39	0.96

Tables:   1   2   3   4