genome.fa.s9084.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009084.1 Hibiscus syriacus cultivar Beakdansim tig00112528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  881682

Tables:   1   2   3   4   

This is table  4  of  4  ( 448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676065--676139	39	1.9	39	83	0	96	32	18	25	24	1.97
677746--677810	19	3.2	19	72	16	67	15	7	13	63	1.51
677763--677830	23	3.1	23	71	16	81	16	11	17	54	1.71
677746--677830	42	2.0	42	100	0	170	16	9	16	57	1.64
681073--681147	35	2.2	34	81	9	91	38	0	1	60	1.06
681286--681339	17	3.2	17	72	0	54	31	0	3	64	1.11
682923--683033	21	5.3	21	83	4	125	18	29	27	25	1.98
683551--683657	34	3.1	34	86	0	151	57	4	1	36	1.31
684053--684340	128	2.3	127	92	1	470	35	19	22	22	1.96
693587--693630	14	3.0	15	73	6	54	52	6	9	31	1.59
693959--694009	23	2.2	23	82	0	57	45	1	1	50	1.24
693997--694065	19	3.6	19	72	14	61	46	1	2	49	1.25
694038--694102	27	2.4	26	78	12	69	49	1	1	47	1.20
694179--694218	20	2.0	21	90	5	64	50	0	2	47	1.14
694150--694204	23	2.4	22	82	11	67	45	0	0	54	0.99
694972--695059	9	10.6	9	68	26	52	65	0	2	31	1.05
694966--695047	16	5.1	16	71	12	60	67	1	1	30	1.06
694979--695055	25	3.0	25	69	12	66	64	0	2	32	1.07
694982--695059	26	3.0	26	80	14	97	65	0	2	32	1.06
695008--695059	21	2.4	21	75	9	52	65	0	1	32	1.04
694963--695088	53	2.6	47	78	16	114	61	0	2	34	1.14
695017--695098	25	3.1	26	80	13	87	57	0	3	39	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695020--695184	83	2.0	82	80	8	183	56	0	3	40	1.15
695113--695173	9	7.0	9	72	24	51	57	0	1	40	1.08
695125--695166	18	2.3	19	84	12	61	61	0	0	38	0.96
695041--695181	27	5.1	27	67	10	81	55	0	3	41	1.17
698939--699022	16	4.8	17	73	21	66	32	2	1	64	1.14
698950--699003	17	3.2	17	82	10	58	35	3	0	61	1.14
705601--705625	6	4.2	6	100	0	50	36	48	16	0	1.46
711415--711445	6	5.2	6	92	0	53	35	48	12	3	1.58
718733--718815	27	2.9	29	80	7	98	15	42	27	14	1.86
718808--718903	48	2.0	47	89	2	147	7	40	23	28	1.81
719381--719486	30	3.5	30	87	5	142	39	0	13	47	1.43
719539--719572	15	2.2	16	94	5	61	38	0	5	55	1.24
722474--722511	17	2.3	16	83	16	51	52	2	0	44	1.14
723004--723052	21	2.3	21	85	3	71	53	16	0	30	1.43
723658--723776	36	3.0	37	72	25	125	15	33	24	26	1.95
723674--723764	46	2.0	46	91	4	148	15	30	24	29	1.95
723760--723823	29	2.2	29	85	0	83	7	28	34	29	1.85
724819--724852	17	1.9	18	88	5	52	23	2	32	41	1.69
726561--726624	23	2.7	24	78	4	67	51	15	23	9	1.72
730856--730882	2	13.5	2	100	0	54	48	0	0	51	1.00
730892--731013	39	3.2	39	74	16	119	33	15	1	49	1.55
731176--731209	16	2.1	17	88	5	52	64	0	2	32	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
732815--732850	19	1.9	18	88	5	54	41	19	2	36	1.66
738058--738094	18	2.1	18	89	0	56	43	18	29	8	1.79
747841--747976	30	4.6	29	76	12	109	38	7	0	53	1.34
760226--760386	40	4.1	40	93	4	281	22	15	27	34	1.94
760226--760386	79	2.0	80	93	3	281	22	15	27	34	1.94
760912--760991	42	1.9	42	92	0	133	26	15	21	37	1.92
761058--761110	20	2.4	23	84	9	67	20	26	15	37	1.92
761420--761634	75	2.9	74	84	4	263	26	20	19	33	1.96
761575--762032	45	10.2	45	86	5	577	26	21	19	32	1.97
761766--761838	20	3.4	20	70	17	65	26	23	17	32	1.97
762038--762217	73	2.5	73	92	0	288	32	16	12	38	1.86
762038--762250	73	2.9	72	88	5	286	31	17	13	37	1.89
762262--762948	112	5.9	111	82	9	707	38	16	19	26	1.92
762292--762948	234	2.8	233	88	4	917	38	16	19	26	1.92
762619--762948	121	2.7	120	89	4	477	40	16	18	24	1.90
762262--762948	355	2.0	344	86	6	961	38	16	19	26	1.92
764085--764143	20	2.8	20	78	9	64	23	6	5	64	1.38
764461--764507	21	2.1	21	84	7	58	44	2	0	53	1.12
764543--764571	2	14.5	2	100	0	58	48	0	0	51	1.00
767458--767494	18	2.0	19	89	5	58	21	2	2	72	1.09
771639--771677	15	2.6	15	87	0	51	10	28	35	25	1.89
771728--771776	15	3.1	15	72	11	53	16	24	34	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
778721--778753	15	2.2	15	94	0	57	21	15	18	45	1.85
783444--783496	23	2.4	23	81	6	65	35	7	0	56	1.28
787731--787845	44	2.6	44	90	5	180	70	8	3	17	1.27
794419--794490	22	3.2	23	70	18	62	59	5	0	34	1.21
794663--794702	21	1.9	21	89	0	62	60	0	2	37	1.11
795056--795107	22	2.4	22	83	0	68	28	0	3	67	1.08
799858--800069	102	2.1	103	93	0	363	25	14	23	35	1.93
800086--800148	23	2.7	23	90	0	90	20	28	25	25	1.99
802960--803011	21	2.5	21	96	0	95	30	3	17	48	1.65
805089--805301	103	2.1	103	93	0	363	25	14	23	37	1.92
805318--805385	23	3.0	23	82	0	82	20	25	26	27	1.99
812498--812536	17	2.3	17	100	0	78	51	35	0	12	1.40
814184--814262	29	2.8	29	90	5	117	34	15	10	40	1.81
818784--818865	29	2.8	29	92	1	128	32	14	10	41	1.81
820609--820648	20	2.0	21	85	14	57	47	0	2	50	1.14
820634--820665	15	2.2	14	94	5	55	34	0	3	62	1.11
828794--828972	50	3.2	55	79	13	197	28	10	18	41	1.84
841094--841176	29	2.8	29	90	1	130	42	10	14	32	1.80
855686--855715	2	15.0	2	100	0	60	50	0	50	0	1.00
871275--871332	30	1.9	31	85	3	82	27	1	20	50	1.58
876645--876674	3	10.3	3	92	7	53	0	30	0	70	0.88
880192--880240	24	2.0	24	100	0	98	28	16	26	28	1.97

Tables:   1   2   3   4

The End!