genome.fa.s9124.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009124.1 Hibiscus syriacus cultivar Beakdansim tig00112614_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  858217

Tables:   1   2   3   4   

This is table  3  of  4  ( 385 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527286--527350	33	2.0	33	93	0	112	24	13	10	50	1.74
529892--529927	18	2.0	18	100	0	72	33	16	22	27	1.95
530889--530932	3	14.7	3	95	0	79	31	2	0	65	1.05
552102--552143	12	3.2	13	83	10	50	35	2	0	61	1.09
556579--556613	12	2.9	12	100	0	70	8	22	34	34	1.85
561204--561230	13	2.1	13	100	0	54	40	0	37	22	1.54
562039--562086	16	3.1	16	71	17	55	27	25	4	43	1.72
564031--564081	26	2.0	26	88	3	77	39	9	3	47	1.55
564590--564697	52	2.1	52	96	1	200	32	5	17	44	1.72
565524--565722	45	4.4	45	85	3	249	39	18	18	23	1.92
565664--565781	62	1.9	62	94	0	209	38	17	22	21	1.93
571946--571987	20	2.1	20	82	8	50	40	2	2	54	1.26
574143--574195	25	2.0	25	85	7	70	49	0	3	47	1.19
580787--580853	31	2.2	31	91	0	107	28	29	17	23	1.97
581671--581745	30	2.5	31	86	8	109	37	18	22	21	1.94
583339--583377	21	1.9	19	85	10	51	48	5	0	46	1.24
584296--584324	13	2.1	14	93	6	51	41	3	0	55	1.17
592956--592998	21	2.0	21	86	8	61	51	2	0	46	1.13
592923--592988	32	2.0	34	88	5	100	48	0	0	51	1.00
593018--593047	2	15.0	2	100	0	60	50	0	0	50	1.00
594444--594516	32	2.3	31	79	9	85	53	6	19	20	1.67
599402--599461	21	2.9	21	97	0	111	40	21	18	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599391--599487	21	4.6	21	85	5	108	41	20	21	16	1.90
603332--603395	30	2.1	30	100	0	128	39	15	15	29	1.89
608016--608160	65	2.2	64	80	9	161	31	15	25	27	1.96
610704--610784	24	3.6	23	74	14	78	28	23	25	22	1.99
614617--614656	21	1.9	21	85	10	55	35	10	2	52	1.48
616652--616688	19	1.9	19	94	0	65	24	16	37	21	1.93
617174--617239	32	2.0	34	91	5	109	50	0	0	50	1.00
618629--618658	14	2.1	14	100	0	60	46	0	40	13	1.43
619137--619175	14	2.8	14	88	7	53	25	12	28	33	1.93
620143--620252	29	3.6	29	74	13	103	40	8	12	39	1.73
623186--623303	55	2.1	55	100	0	236	33	14	20	32	1.92
624834--624886	19	2.9	18	76	18	56	54	5	1	37	1.35
625750--625842	29	3.1	28	67	24	66	40	6	20	32	1.78
625749--625884	60	2.3	59	82	10	152	43	5	16	34	1.71
626107--626182	31	2.6	29	83	8	98	42	13	7	36	1.73
629459--629533	31	2.4	31	90	0	123	28	9	17	45	1.79
637759--637841	29	2.8	29	92	1	139	43	9	14	32	1.78
642521--642603	29	2.8	29	92	1	139	43	9	14	32	1.78
647866--647904	4	9.8	4	94	0	69	46	25	2	25	1.66
648977--649007	16	1.9	16	93	0	53	29	41	16	12	1.85
649376--649432	29	2.0	29	85	0	78	24	36	29	8	1.86
651908--651953	24	1.9	24	86	0	65	10	15	19	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
652343--652386	21	2.1	21	91	0	70	34	11	22	31	1.90
656049--656121	20	3.7	19	77	12	67	43	9	15	31	1.78
658036--658060	6	4.2	6	100	0	50	32	0	52	16	1.44
662840--662994	9	16.2	9	72	11	94	17	52	12	16	1.74
662849--662904	21	2.7	21	94	0	94	21	50	10	17	1.77
662884--662967	27	3.1	27	87	0	105	19	53	9	17	1.70
662891--662949	18	3.3	18	97	0	109	18	55	8	16	1.66
667546--667575	12	2.5	12	94	0	51	50	3	0	46	1.18
668414--668446	16	2.1	16	100	0	66	42	0	12	45	1.41
670633--670794	21	7.9	21	70	17	135	17	20	24	37	1.94
670654--670723	20	3.5	20	70	18	63	12	21	24	41	1.88
670630--670744	41	2.8	41	98	0	221	14	20	26	38	1.92
670674--670794	62	2.0	61	91	4	199	18	21	24	35	1.95
671487--671617	41	3.2	41	88	4	185	38	24	22	15	1.92
671521--671592	20	3.5	20	70	17	67	40	25	23	11	1.87
679136--679179	23	1.9	23	90	0	70	38	9	18	34	1.82
679280--679369	23	3.9	23	94	0	153	35	20	7	36	1.81
679552--680103	274	2.0	275	97	0	1034	43	9	5	42	1.59
692546--692657	35	3.1	35	80	3	125	34	2	17	44	1.63
692552--692656	36	2.9	35	81	4	120	33	2	17	46	1.62
696743--696769	6	4.5	6	100	0	54	33	0	66	0	0.92
698550--698587	3	12.7	3	100	0	76	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703173--703201	2	14.5	2	100	0	58	48	0	0	51	1.00
707856--707928	29	2.5	29	97	0	137	47	15	8	28	1.73
707856--707953	29	3.3	29	87	5	90	51	13	8	27	1.69
709915--710475	251	2.2	247	82	10	621	42	16	11	29	1.83
723200--723358	87	1.8	87	93	0	273	24	23	18	33	1.97
724238--724286	25	2.0	25	87	0	71	36	32	16	14	1.89
726722--726786	23	2.8	23	88	0	103	18	23	24	33	1.96
731784--731852	23	3.0	23	93	0	120	15	24	26	33	1.95
732232--732294	2	31.5	2	100	0	126	49	0	0	50	1.00
733118--733175	29	2.0	29	83	10	73	34	5	18	41	1.73
734357--734402	22	2.1	22	88	8	67	43	4	15	36	1.66
736503--736537	17	2.1	17	89	10	54	51	5	17	25	1.67
737352--737486	60	2.2	60	84	2	173	34	22	2	40	1.67
737388--737515	60	2.1	60	81	5	143	35	24	3	37	1.71
742054--742089	19	1.9	19	88	5	56	55	16	0	27	1.42
742189--742234	20	2.2	21	92	3	76	52	19	6	21	1.69
742297--742343	13	3.7	13	74	5	51	27	23	0	48	1.51
744297--744354	30	1.9	30	86	6	82	43	20	6	29	1.78
745547--745636	31	2.9	31	78	5	83	45	14	4	35	1.65
746899--746943	21	2.1	21	87	0	63	31	28	24	15	1.96
747546--747592	23	2.0	24	91	4	78	44	0	21	34	1.52
747770--747925	31	5.0	31	87	4	217	21	20	21	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747772--747925	62	2.5	62	90	6	242	21	20	20	37	1.95
750751--750795	21	2.1	21	87	0	63	31	28	24	15	1.96
751398--751444	23	2.0	24	91	4	78	44	0	21	34	1.52
751622--751777	31	5.0	31	88	1	224	21	20	21	36	1.95
751624--751777	62	2.5	62	91	4	249	21	20	21	36	1.95
762401--762435	17	2.2	15	90	10	52	42	0	0	57	0.99
764010--764670	153	4.4	151	87	2	905	11	19	23	45	1.83
764002--764666	303	2.2	303	92	1	1116	11	19	23	45	1.82
769350--769489	59	2.4	59	87	3	210	36	15	12	36	1.84
774248--774358	7	16.3	6	75	21	71	18	0	33	47	1.49
774247--774355	21	5.2	21	76	12	109	18	0	33	48	1.48
774236--774361	14	9.1	14	75	10	100	17	0	32	50	1.47
774481--774543	11	5.9	11	69	14	51	41	1	1	55	1.19
774641--774684	20	2.1	20	87	8	61	34	0	31	34	1.58
775446--775505	11	5.6	11	77	13	63	41	0	1	56	1.09
775443--775504	30	2.1	29	85	11	81	40	0	3	56	1.15
775453--775505	21	2.5	21	81	6	72	41	0	1	56	1.10
775597--775728	67	2.0	67	93	3	230	52	2	7	37	1.43
777324--777396	36	2.0	36	84	10	96	49	2	2	45	1.31
777991--778046	20	2.8	20	100	0	112	25	26	10	37	1.88
778633--778677	21	2.1	21	87	0	63	55	6	2	35	1.38
780914--781049	60	2.3	60	76	3	132	38	13	13	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784979--785011	2	16.5	2	100	0	66	48	0	0	51	1.00
786585--786661	40	1.9	40	89	5	120	22	12	36	28	1.91
787840--787901	29	2.2	29	82	11	83	41	1	0	56	1.09
788927--788995	20	3.5	19	79	14	68	31	15	27	24	1.96
788867--789070	95	2.1	95	83	3	250	34	16	22	27	1.95
789376--789406	2	16.0	2	93	6	55	48	0	0	51	1.00
789426--789745	55	5.8	55	91	1	473	29	21	20	29	1.98
794275--794338	20	3.2	20	80	8	76	26	10	17	45	1.81
794645--794703	31	1.9	31	100	0	118	33	10	6	49	1.63
797141--797207	3	22.3	3	93	0	62	44	0	0	55	0.99

Tables:   1   2   3   4