Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009124.1 Hibiscus syriacus cultivar Beakdansim tig00112614_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  858217

Tables:   1   2   3   4   

This is table  4  of  4  ( 385 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
797270--797311
17
2.4
17
88
11
59
30
2
23
42
1.67
797370--797401
17
2.0
17
88
11
50
59
3
6
31
1.38
798667--798691
12
2.1
12
100
0
50
8
8
0
84
0.79
801653--801690
19
2.0
19
100
0
76
15
31
26
26
1.96
809311--809375
23
2.7
22
81
13
67
55
0
1
43
1.09
809331--809399
21
3.2
21
80
10
59
49
0
1
49
1.09
809379--809432
23
2.3
23
77
0
63
42
3
5
48
1.44
810152--810217
19
3.3
19
70
12
60
42
21
18
18
1.89
810145--810258
41
2.8
41
87
4
167
42
21
17
17
1.88
810167--810238
22
3.4
22
73
11
78
41
23
16
18
1.89
810234--810431
21
9.8
20
66
4
101
38
25
17
18
1.92
810202--810403
20
9.9
20
64
7
84
40
24
17
17
1.91
810250--810428
41
4.4
41
89
0
270
37
25
17
19
1.93
812383--812426
23
1.9
23
81
9
54
38
4
13
43
1.65
814471--814654
64
2.9
64
81
10
216
28
25
17
27
1.98
814606--814654
19
2.6
19
84
9
57
24
28
20
26
1.99
820205--821536
453
3.0
443
81
5
1474
35
16
24
22
1.94
830003--830027
7
3.6
7
100
0
50
36
48
0
16
1.46
835227--835576
136
2.6
136
89
2
517
24
22
18
35
1.96
836541--836606
11
5.5
12
82
14
75
3
15
0
81
0.80
836548--836605
11
5.1
11
85
8
80
1
12
0
86
0.65
836548--836591
14
3.1
14
93
3
70
0
11
0
88
0.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
836541--836606
22
2.8
24
82
15
84
3
15
0
81
0.80
836558--836607
13
3.9
13
87
12
61
4
12
0
84
0.76
853698--853755
22
2.5
22
83
11
62
46
0
0
53
1.00

Tables:   1   2   3   4

The End!