genome.fa.s9133.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009133.1 Hibiscus syriacus cultivar Beakdansim tig00112632_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  771734

Tables:   1   2   

This is table  2  of  2  ( 234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411680--411727	21	2.3	21	96	0	87	27	18	12	41	1.86
416339--416386	21	2.3	21	96	0	87	27	18	12	41	1.86
420277--420310	18	1.9	18	88	5	52	20	5	17	55	1.62
428160--428190	13	2.4	13	88	0	53	51	0	0	48	1.00
428194--428237	17	2.7	16	83	13	54	38	2	2	56	1.24
428208--428247	17	2.4	17	87	8	55	45	2	0	52	1.14
439770--439867	20	4.8	20	77	3	88	36	23	18	21	1.95
439711--439867	41	3.9	41	70	11	126	38	25	17	18	1.93
439854--440024	20	8.6	20	84	5	107	35	26	18	20	1.95
439834--440043	60	3.5	58	80	7	208	37	25	17	20	1.94
439888--440043	20	7.8	20	87	4	174	35	25	17	21	1.95
439854--440043	40	4.8	40	86	5	208	36	25	17	20	1.94
440947--440971	12	2.1	12	100	0	50	72	0	28	0	0.86
443254--443631	19	21.4	19	81	15	474	47	18	20	13	1.83
443282--443653	52	7.0	52	87	6	561	46	17	21	13	1.83
443254--443653	71	5.7	71	83	13	492	46	18	21	13	1.83
443660--443761	19	5.6	19	85	12	151	14	23	17	44	1.86
443868--443904	14	2.6	14	91	0	65	45	21	0	32	1.52
445884--445940	14	3.7	14	77	20	60	45	22	21	10	1.82
445865--445957	33	2.8	33	95	0	168	47	21	20	10	1.80
445828--445962	19	7.6	19	76	16	128	45	23	19	11	1.82
445958--446105	19	8.3	19	76	15	154	9	16	28	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445958--446088	52	2.5	51	92	3	217	8	16	29	46	1.75
446153--446621	93	5.1	93	98	0	904	46	18	13	21	1.83
448318--448379	20	3.2	20	79	4	81	43	19	24	12	1.86
448420--448476	14	3.7	14	75	20	60	8	24	22	43	1.81
448434--448522	19	4.9	19	72	15	80	11	23	21	43	1.84
448404--448522	33	3.4	33	88	6	157	10	22	22	44	1.82
448614--448684	33	2.2	33	92	0	115	49	16	22	11	1.78
448866--448920	22	2.5	22	81	0	74	20	16	40	23	1.91
449067--449260	20	9.6	20	79	5	203	19	20	24	35	1.95
449069--449240	60	2.8	60	84	0	236	20	19	25	34	1.96
449066--449381	60	5.2	60	77	8	232	20	18	25	36	1.95
449227--449324	20	4.8	20	77	3	79	21	18	23	36	1.95
449227--449383	61	2.6	60	80	7	176	19	17	25	38	1.93
449227--449383	41	3.9	41	70	14	110	19	17	25	38	1.93
450331--450389	29	2.0	29	100	0	118	49	13	13	23	1.78
455009--455068	29	2.1	28	90	3	93	50	11	11	26	1.73
462042--462151	35	3.2	34	79	14	93	33	0	4	61	1.16
462065--462151	35	2.5	35	81	14	99	37	0	3	58	1.15
463932--464000	21	3.3	21	88	8	104	18	31	27	21	1.97
464519--464619	34	3.0	34	82	0	121	53	2	2	40	1.31
465558--465598	8	5.2	8	88	5	66	36	26	0	36	1.57
465558--465598	15	2.6	16	84	7	57	36	26	0	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486549--486582	13	2.6	13	100	0	68	55	0	29	14	1.40
508297--508612	103	3.1	103	95	0	560	27	12	23	36	1.91
508629--508696	23	3.0	23	84	0	73	22	25	25	27	1.99
513692--513895	103	2.0	103	93	0	345	27	13	22	36	1.92
513921--513988	23	3.0	23	88	0	91	20	25	26	27	1.99
522282--522402	62	1.9	63	89	1	190	30	19	19	30	1.96
537228--537347	54	2.2	54	87	0	159	16	4	59	20	1.53
537268--537347	24	3.1	24	67	19	70	13	2	63	20	1.41
537268--537379	54	2.1	54	85	6	147	16	3	60	19	1.49
537385--537470	42	2.0	42	86	0	118	15	4	58	22	1.55
537373--537453	21	3.9	21	70	6	65	14	3	61	19	1.48
537433--537497	27	2.3	28	89	7	96	16	4	58	20	1.56
537433--537497	30	2.2	30	86	5	87	16	4	58	20	1.56
539176--539201	6	4.3	6	100	0	52	53	15	15	15	1.73
540784--540833	14	3.7	14	73	7	50	42	4	0	54	1.19
540824--540871	24	2.0	24	84	8	62	47	0	0	52	1.00
540879--540949	29	2.4	29	100	0	142	45	5	7	42	1.55
547458--547507	15	3.3	15	81	10	57	2	42	0	56	1.11
548838--548907	33	2.1	33	89	5	106	14	10	35	40	1.79
550820--550908	38	2.4	38	90	7	146	38	39	11	11	1.77
550771--551337	263	2.2	258	91	2	893	35	26	12	25	1.91
554267--554319	2	26.5	2	100	0	106	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559441--559467	13	2.1	13	100	0	54	7	33	0	59	1.25
562828--562882	30	1.9	27	85	10	74	45	5	3	45	1.44
565119--565152	14	2.4	14	90	0	50	26	0	29	44	1.55
565773--565801	13	2.3	13	94	5	51	51	0	0	48	1.00
576511--576551	11	4.0	11	75	18	52	58	7	7	26	1.51
593522--593636	60	1.9	60	82	3	142	45	15	5	33	1.69
593598--593668	31	2.3	31	100	0	142	49	15	5	29	1.67
610042--610066	5	5.0	5	100	0	50	60	0	0	40	0.97
613686--613710	3	8.3	3	100	0	50	32	0	68	0	0.90
616745--616790	23	2.0	23	95	0	83	19	17	10	52	1.74
617765--617918	31	5.0	31	92	3	242	38	23	18	20	1.93
618878--618933	18	3.3	18	69	20	57	19	35	26	17	1.94
619824--619867	21	2.1	21	83	8	54	52	6	0	40	1.28
623231--623257	3	9.0	3	100	0	54	66	0	0	33	0.92
625324--625638	162	1.9	162	98	1	605	28	26	13	31	1.93
628253--628414	81	2.0	80	98	1	315	37	20	25	16	1.93
631969--632062	30	3.2	30	87	1	127	45	2	6	45	1.40
637708--637762	26	2.1	27	86	10	78	49	0	1	49	1.11
637716--637773	26	2.2	26	78	6	64	53	0	1	44	1.10
647031--647090	29	2.1	29	90	0	93	53	1	10	35	1.44
650142--650198	28	2.0	28	86	0	78	28	22	19	29	1.98
659143--659175	3	11.0	3	100	0	66	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660981--661019	20	1.9	21	89	5	62	33	0	0	66	0.92
663519--663580	31	2.2	28	78	16	65	30	27	22	19	1.98
666391--666434	22	2.0	23	86	4	63	40	6	9	43	1.63
671449--671797	155	2.2	158	85	5	449	31	13	23	31	1.93
689289--689314	4	6.5	4	100	0	52	26	0	23	50	1.50
692732--692800	30	2.3	30	95	5	122	42	23	13	21	1.88
696516--696543	3	9.3	3	100	0	56	67	0	32	0	0.91
704325--704581	133	1.9	133	92	1	435	34	15	16	33	1.90
705489--705536	18	2.7	18	83	0	69	33	33	18	14	1.91
708473--708505	16	2.0	17	88	5	50	33	6	0	60	1.21
711295--711456	83	2.0	83	90	2	254	37	19	11	32	1.87
712289--712343	6	9.0	6	74	18	51	61	1	32	3	1.24
722867--722912	23	2.0	23	100	0	92	30	21	17	30	1.96
738789--738833	21	2.1	21	87	0	63	31	28	24	15	1.96
739658--739811	62	2.5	62	90	2	247	21	20	21	37	1.95
739658--739811	31	5.0	31	87	3	204	21	20	21	37	1.95
742938--742982	21	2.1	21	87	0	63	31	28	24	15	1.96
743805--743958	62	2.5	62	90	2	247	21	20	21	37	1.95
743805--743958	31	5.0	31	87	3	204	21	20	21	37	1.95
745105--745139	17	2.1	17	94	0	61	62	2	0	34	1.10
752869--752922	16	3.2	16	82	10	56	68	1	0	29	1.00
752869--752935	8	8.4	8	70	18	50	68	1	0	29	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
754057--754144	7	12.6	7	100	0	176	13	0	44	42	1.44
754141--754274	6	21.7	6	86	12	159	0	14	67	17	1.23
754141--754274	38	3.4	40	84	14	165	0	14	67	17	1.23
754271--771734	7	2576.9	7	91	7	23228	14	3	43	39	1.62

Tables:   1   2

The End!