genome.fa.s915.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000915.1 Hibiscus syriacus cultivar Beakdansim tig00001828_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78834

Tables:   1   2   

This is table  2  of  2  ( 179 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56024--56269	95	2.6	95	89	0	357	24	24	13	37	1.91
56254--56338	34	2.6	34	81	3	111	23	25	16	34	1.95
56159--56425	128	2.1	128	96	0	489	24	25	14	35	1.93
56886--57131	95	2.6	96	88	3	363	25	23	12	38	1.90
57116--57200	33	2.6	34	79	3	102	24	24	16	34	1.95
57116--57193	34	2.3	33	84	2	93	26	23	17	32	1.97
57021--57287	128	2.1	128	97	0	498	25	24	14	35	1.93
51978--59612	862	8.9	862	96	0	13431	30	22	11	36	1.89
57746--57991	95	2.6	95	88	1	350	24	25	12	37	1.91
57881--58146	128	2.1	127	94	2	462	23	24	14	36	1.93
58606--58851	95	2.6	95	88	1	359	24	25	12	36	1.91
58836--58920	33	2.6	34	79	3	102	23	24	16	35	1.95
58741--59006	128	2.1	127	95	2	471	23	25	14	36	1.93
58836--58913	34	2.3	33	84	2	93	25	23	17	33	1.96
59598--59682	33	2.6	34	79	3	102	23	25	15	35	1.94
59598--59675	34	2.3	33	84	2	93	25	24	16	33	1.96
59503--59772	128	2.1	128	95	0	488	24	25	13	37	1.92
58701--60379	767	2.2	762	93	1	2842	30	22	10	36	1.88
60230--60503	95	2.9	95	86	1	345	24	25	12	37	1.91
60460--60544	34	2.6	34	83	3	120	22	25	16	35	1.95
60365--60631	128	2.1	128	93	1	455	23	25	14	35	1.93
61091--61335	95	2.6	95	86	2	314	25	22	12	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61321--61405	34	2.6	34	81	3	111	23	25	16	34	1.95
61226--61492	128	2.1	128	93	2	457	24	24	14	35	1.94
61953--62198	95	2.6	95	88	1	359	25	24	13	36	1.92
62183--62267	34	2.6	34	81	3	111	23	25	16	34	1.95
62088--62353	128	2.1	127	95	0	478	24	25	15	35	1.94
62813--63057	95	2.6	95	86	1	321	25	23	12	39	1.89
63043--63127	34	2.6	34	79	3	102	23	24	16	35	1.95
62948--63214	128	2.1	128	93	1	455	24	24	14	36	1.93
63675--63920	95	2.6	95	88	1	359	25	24	13	36	1.92
63905--63989	34	2.6	34	81	3	111	23	25	16	34	1.95
63810--64076	128	2.1	128	96	0	489	24	25	14	35	1.94
64532--64777	95	2.6	95	85	1	305	26	23	12	38	1.89
64766--64846	34	2.4	34	79	4	103	23	27	16	33	1.95
64667--64933	128	2.1	128	93	1	455	24	24	14	36	1.93
59463--69979	862	12.2	862	95	0	18777	30	22	11	36	1.89
65394--65667	95	2.9	95	81	3	295	25	25	11	37	1.89
65624--65708	34	2.6	34	81	3	111	23	25	16	34	1.95
65529--65795	128	2.1	128	95	1	473	24	25	14	35	1.93
66256--66501	95	2.6	95	86	2	316	26	23	11	38	1.89
66486--66570	33	2.6	34	79	3	102	23	24	16	35	1.95
66486--66563	34	2.3	33	84	2	93	25	23	17	33	1.96
66391--66657	128	2.1	128	93	1	455	24	24	14	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67119--67363	95	2.6	95	86	2	332	26	25	11	36	1.90
67348--67431	34	2.5	34	80	3	109	23	25	16	34	1.95
67253--67519	128	2.1	128	92	1	446	23	25	13	36	1.92
67980--68225	95	2.6	95	86	1	323	26	23	12	38	1.90
68210--68294	34	2.6	34	81	3	111	23	25	16	34	1.95
68115--68381	128	2.1	128	94	1	464	24	24	14	36	1.93
68843--69087	95	2.6	95	90	1	375	25	24	13	36	1.92
68977--69219	130	1.9	128	94	1	432	25	24	13	36	1.92
69706--69997	95	3.1	95	84	5	360	24	23	13	38	1.91
70440--70726	95	3.0	95	85	4	377	24	24	13	37	1.91
71163--71205	22	2.0	22	86	9	61	34	18	9	37	1.83
71173--71373	95	2.1	94	81	7	244	26	20	11	40	1.87
69105--71373	734	3.1	734	92	0	3673	31	21	10	37	1.87
71360--71405	18	2.4	18	82	7	56	34	19	10	34	1.87
75609--75779	79	2.2	79	90	0	261	30	21	9	38	1.86

Tables:   1   2

The End!