genome.fa.s9213.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009213.1 Hibiscus syriacus cultivar Beakdansim tig00112800_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  747713

Tables:   1   2   3   

This is table  2  of  3  ( 278 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286651--286783	60	2.2	61	86	4	180	32	12	14	41	1.82
290589--290629	19	2.1	19	86	13	57	36	4	0	58	1.20
291555--291603	18	2.7	18	75	9	55	42	2	4	51	1.32
300705--300742	17	2.4	15	91	8	58	57	13	0	28	1.36
301652--301698	11	4.1	11	89	10	60	70	2	0	27	0.99
303201--303298	44	2.2	44	94	1	169	29	13	23	33	1.93
306818--306881	21	3.4	20	66	29	59	31	4	18	45	1.70
306816--306931	35	3.2	36	87	6	173	33	4	18	43	1.70
311434--311517	37	2.3	38	87	6	120	33	4	19	42	1.72
313155--313216	2	31.5	2	96	3	117	50	0	0	50	1.00
321140--321201	32	1.9	32	83	0	79	38	20	8	32	1.82
321148--321209	32	1.9	32	83	6	81	37	20	9	32	1.86
321184--321245	32	1.9	32	83	0	79	40	11	12	35	1.80
325133--325254	60	2.0	60	84	3	156	40	13	11	33	1.81
325464--325502	2	19.0	2	89	5	60	46	2	0	51	1.14
325546--325577	7	4.7	7	92	7	57	43	0	12	43	1.42
325546--325583	20	1.9	20	94	0	67	42	2	10	44	1.52
325593--325659	17	4.2	17	66	30	58	49	5	1	43	1.36
325988--326136	71	2.3	63	76	19	160	31	10	7	50	1.65
326831--326946	60	1.9	60	82	6	146	41	13	10	34	1.79
327711--327743	2	16.5	2	100	0	66	51	0	0	48	1.00
330145--330210	31	2.1	31	91	0	105	40	13	22	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334942--335000	31	1.9	31	86	6	84	64	5	8	22	1.41
335089--336096	333	3.0	335	91	2	1605	43	8	5	43	1.56
341147--341252	51	2.1	52	96	1	196	42	12	12	33	1.80
341746--341925	95	1.9	94	91	1	297	28	13	18	40	1.88
363913--363968	24	2.3	24	93	0	94	25	10	8	55	1.63
366032--366541	81	6.3	80	72	10	345	38	11	15	35	1.83
366199--366532	162	2.1	162	84	2	438	35	12	16	35	1.86
371367--371393	2	13.5	2	100	0	54	48	0	0	51	1.00
371508--371543	2	18.0	2	100	0	72	50	0	0	50	1.00
371543--371574	2	16.0	2	93	0	55	46	0	53	0	1.00
371543--371582	10	4.0	10	93	0	53	42	0	57	0	0.98
385156--385209	19	2.7	19	82	5	54	33	7	7	51	1.58
385310--385394	31	2.6	33	68	17	79	44	2	0	52	1.13
385425--385510	28	3.0	29	77	14	88	48	0	1	50	1.08
385436--385509	19	3.9	19	71	19	57	52	0	1	45	1.09
385399--385501	29	3.5	29	77	15	97	47	0	1	50	1.12
385485--385525	12	3.1	14	80	20	52	56	0	0	43	0.99
385485--385547	24	2.5	26	85	7	78	52	1	0	46	1.10
385820--385884	15	4.4	15	82	3	78	38	15	6	40	1.72
385820--385884	30	2.2	30	88	2	96	38	15	6	40	1.72
385830--385886	15	3.9	15	88	2	89	40	15	5	38	1.70
389190--389301	7	16.0	7	100	0	224	42	14	28	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395543--395571	13	2.1	14	93	6	51	20	3	0	75	0.94
396773--396834	2	30.5	2	93	3	106	50	1	0	48	1.10
398604--398723	60	2.0	60	88	0	177	39	9	10	40	1.72
400560--400649	45	2.0	45	100	0	180	40	28	11	20	1.86
400651--400691	2	20.5	2	89	0	64	48	4	0	46	1.23
405713--405741	4	7.2	4	100	0	58	24	0	24	51	1.48
416038--416091	26	2.1	26	100	0	108	40	33	7	18	1.78
420839--420864	12	2.2	12	100	0	52	50	19	23	7	1.73
429376--429410	7	5.0	7	100	0	70	14	28	28	28	1.95
435919--436003	26	3.2	26	66	26	68	30	8	18	42	1.80
435916--435993	26	2.8	30	66	28	71	32	10	15	42	1.80
437044--437068	6	4.2	6	100	0	50	0	32	16	52	1.44
437753--437874	59	2.1	59	83	7	151	32	13	18	35	1.90
452287--452335	2	25.5	2	85	8	66	48	2	0	48	1.12
452274--452336	20	3.3	19	82	8	83	47	3	0	49	1.17
456356--456442	32	2.8	31	77	16	90	51	1	5	41	1.33
467658--467683	13	2.0	13	100	0	52	15	23	15	46	1.83
474370--474408	3	13.0	3	83	0	51	7	30	0	61	1.24
474374--474411	9	4.2	9	93	6	60	10	31	0	57	1.32
474383--474420	18	2.1	18	90	0	58	13	36	0	50	1.42
475975--476021	24	1.9	25	86	4	69	40	10	19	29	1.85
476281--476307	14	1.9	14	100	0	54	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480450--480562	60	1.9	60	81	7	140	32	15	11	39	1.84
491303--491756	6	76.5	6	95	2	675	33	4	16	45	1.68
495103--495181	38	2.1	39	90	2	124	12	8	34	44	1.74
495572--495622	26	2.0	26	100	0	102	19	7	25	47	1.76
496203--496246	18	2.6	18	85	7	65	31	22	6	38	1.81
497281--497347	33	2.0	34	82	2	82	62	10	10	16	1.53
497334--497408	10	7.2	10	69	8	51	61	21	8	9	1.52
497335--497383	20	2.5	20	93	0	89	63	24	8	4	1.40
500333--500387	26	2.1	26	100	0	110	47	10	16	25	1.79
504860--504897	20	1.9	20	88	0	58	21	26	10	42	1.85
505357--505392	2	18.0	2	100	0	72	50	0	0	50	1.00
506013--506090	32	2.4	31	83	8	93	55	6	15	23	1.63
511279--511311	14	2.3	15	89	5	50	27	6	12	54	1.60
511763--512147	58	6.7	58	76	7	338	36	8	13	42	1.73
511763--512147	174	2.2	170	80	5	409	36	8	13	42	1.73
512219--512394	39	4.6	39	73	12	143	38	6	10	44	1.65
512324--512573	97	2.6	96	77	5	261	43	5	10	40	1.62
512518--512946	39	10.5	40	73	14	243	39	5	13	41	1.68
512510--512682	40	4.4	39	76	10	140	38	5	13	42	1.67
512723--512946	40	5.5	40	77	12	170	39	5	13	41	1.68
513761--513848	39	2.3	39	97	0	167	53	18	12	15	1.73
513784--513850	21	3.3	21	64	19	61	56	17	11	13	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514101--514158	30	1.9	30	96	0	107	31	3	18	46	1.66
514242--514341	8	14.0	8	67	24	55	25	34	16	25	1.95
514242--514340	21	4.7	21	83	12	123	24	34	16	25	1.95
514270--514337	13	5.0	13	70	19	50	27	30	16	25	1.96
515775--515808	14	2.4	15	90	9	54	61	0	32	5	1.20
517594--517653	30	2.0	30	96	0	111	30	5	20	45	1.72
517737--517844	8	15.0	8	69	23	71	25	34	15	25	1.95
517744--517843	21	4.8	21	82	11	125	25	34	16	25	1.95
517737--517840	13	7.9	13	66	24	51	25	33	16	25	1.96
522363--522423	2	30.5	2	100	0	122	50	0	49	0	1.00
530468--530498	13	2.4	13	100	0	62	35	6	6	51	1.53
543823--543866	23	1.9	23	100	0	88	31	4	9	54	1.52
543823--543885	23	2.6	26	85	14	82	33	4	9	52	1.55
549796--549936	72	2.0	72	87	2	203	31	13	21	34	1.92
563804--563844	19	2.1	19	86	4	55	29	4	0	65	1.13
569388--569415	2	14.0	2	100	0	56	50	0	0	50	1.00
571679--571793	22	5.4	22	75	8	130	38	24	17	20	1.93
571661--571793	41	3.2	41	90	4	221	39	23	17	20	1.92
572007--572038	6	5.7	6	85	14	50	34	0	0	65	0.93
573411--573441	2	16.0	2	93	6	55	51	0	0	48	1.00
576609--576647	2	19.5	2	100	0	78	48	0	51	0	1.00
584465--584548	33	2.5	33	98	0	159	35	14	19	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584531--584573	20	2.2	20	83	4	61	34	6	23	34	1.82
592048--592126	37	2.1	37	90	0	122	36	34	6	22	1.80
592061--592135	37	2.0	37	92	0	123	40	36	6	17	1.76
596335--596383	21	2.3	20	80	13	53	34	14	10	40	1.79
600420--600734	36	8.5	37	79	11	267	46	5	4	43	1.45
600557--600726	79	2.1	82	81	8	197	47	6	4	41	1.50
601944--602003	9	7.2	8	74	18	52	25	5	1	68	1.19
609714--609754	2	20.5	2	100	0	82	51	0	0	48	1.00
613751--613787	8	4.4	8	90	10	56	51	0	2	45	1.15
613746--613787	16	2.5	18	85	14	63	50	0	4	45	1.23

Tables:   1   2   3