Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009213.1 Hibiscus syriacus cultivar Beakdansim tig00112800_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  747713

Tables:   1   2   3   

This is table  3  of  3  ( 278 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
637446--637495
25
2.0
25
84
7
66
40
0
0
60
0.97
637620--637649
15
2.1
15
93
6
53
60
3
0
36
1.14
637646--637683
20
2.0
20
89
5
60
39
0
0
60
0.97
640845--640898
28
1.9
28
92
0
90
29
12
14
42
1.83
644736--644798
31
2.0
31
100
0
126
34
0
31
33
1.58
647324--647368
2
22.5
2
100
0
90
48
0
0
51
1.00
647623--647699
29
2.4
33
77
18
99
48
5
9
37
1.57
647629--647692
29
2.2
29
94
0
110
43
6
10
39
1.65
648781--648825
18
2.5
18
96
0
81
35
22
22
20
1.96
654061--654110
24
2.3
21
75
21
57
36
0
0
64
0.94
662854--662898
21
2.1
21
84
8
56
33
4
2
60
1.29
665780--665883
37
2.8
37
82
0
127
40
13
12
33
1.82
666345--666369
2
12.5
2
100
0
50
48
0
0
52
1.00
666464--666572
14
7.5
14
68
15
78
26
4
1
66
1.21
666599--666673
23
3.3
22
83
14
82
33
1
2
62
1.17
666613--666691
22
3.6
21
85
9
88
34
0
1
64
1.02
666635--666684
2
26.5
2
84
11
52
40
0
0
60
0.97
666635--666706
31
2.4
30
82
8
85
37
2
0
59
1.12
666814--666880
2
34.5
2
89
5
93
44
0
0
55
0.99
667110--667159
23
2.1
25
85
7
68
36
2
0
62
1.07
667212--667275
28
2.3
28
77
20
71
18
7
0
73
1.07
667794--667828
17
2.1
17
94
0
61
62
0
0
37
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
672124--672183
26
2.3
27
94
2
104
18
3
40
38
1.67
677903--678020
53
2.2
53
81
4
139
41
11
20
26
1.87
679946--679981
6
6.0
6
86
0
54
50
16
16
16
1.79
679979--680263
142
2.0
143
90
1
446
29
14
14
41
1.85
704127--704603
236
2.0
238
84
3
613
25
20
17
35
1.95
706006--706071
34
1.9
34
84
6
89
7
30
7
54
1.56
706587--706666
24
3.3
24
80
0
97
30
11
20
38
1.87
710886--710926
16
2.6
16
88
0
64
41
21
4
31
1.74
711684--711744
28
2.2
28
84
0
77
65
6
1
26
1.26
719738--719763
12
2.2
12
100
0
52
42
7
11
38
1.70
721784--721832
10
4.9
10
82
0
53
26
28
0
44
1.54
721869--721902
9
3.9
9
84
7
52
35
0
2
61
1.11
721868--721906
17
2.4
17
95
4
71
33
0
5
61
1.18
722856--722891
3
11.7
3
94
5
63
33
0
0
66
0.92
740364--740422
24
2.4
25
86
13
86
47
5
6
40
1.52
740373--740420
24
2.0
24
100
0
96
50
4
8
37
1.52

Tables:   1   2   3

The End!