Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009235.1 Hibiscus syriacus cultivar Beakdansim tig00112857_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1478786

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 628 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1399777--1399845
20
3.4
20
66
4
57
40
26
18
14
1.89
1399772--1399874
41
2.5
41
91
0
161
38
25
17
18
1.92
1399632--1399903
142
1.9
142
90
1
429
35
23
20
20
1.96
1400487--1400525
16
2.4
16
91
4
60
33
7
23
35
1.83
1400487--1400520
16
2.1
17
94
5
61
35
5
23
35
1.79
1411720--1411753
17
2.1
17
89
10
54
38
11
17
32
1.86
1422890--1423015
31
4.0
31
92
3
191
19
18
23
38
1.93
1428494--1428528
16
2.3
15
90
9
54
2
14
31
51
1.57
1428774--1428807
18
1.9
17
100
0
59
35
14
2
47
1.60
1434667--1434749
29
2.8
29
87
1
112
40
10
14
33
1.81
1439421--1439503
29
2.8
29
85
1
112
43
9
13
33
1.76
1440595--1440674
40
2.0
40
90
0
124
38
13
16
31
1.87
1441771--1441835
28
2.3
28
97
0
121
66
7
7
18
1.41
1442029--1442092
34
1.9
32
84
6
83
48
0
0
51
1.00
1443401--1443447
13
3.8
12
88
8
67
72
0
4
23
1.02
1443401--1443447
4
11.2
4
86
8
67
72
0
4
23
1.02
1443401--1443447
17
2.8
17
90
6
69
72
0
4
23
1.02
1447505--1447603
21
4.6
21
86
5
101
22
17
39
21
1.92
1447527--1447605
21
3.8
21
89
0
104
21
16
40
21
1.91
1469733--1469774
20
2.0
20
95
4
75
64
9
4
21
1.42
1471337--1471403
23
2.9
23
88
0
98
26
25
25
22
2.00
1471419--1471636
103
2.1
103
94
1
384
37
23
13
25
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1472846--1472909
32
2.1
30
91
5
101
35
0
35
28
1.58
1472874--1472921
25
1.9
25
91
0
78
33
0
35
31
1.58
1475022--1475051
6
4.8
6
95
4
51
66
3
0
30
1.07
1475393--1475429
2
20.0
2
84
15
53
48
0
0
51
1.00
1476189--1476238
2
25.0
2
100
0
100
50
0
0
50
1.00
1476238--1476281
2
22.0
2
100
0
88
50
0
50
0
1.00

Tables:   1   2   3   4   5   6

The End!