genome.fa.s9274.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009274.1 Hibiscus syriacus cultivar Beakdansim tig00112957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  585551

Tables:   1   2   3   

This is table  1  of  3  ( 326 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2265--2421	63	2.5	63	78	8	167	30	21	18	29	1.97
2991--3146	30	5.1	30	75	3	123	30	14	24	30	1.95
9421--9480	30	2.0	30	90	0	93	33	15	21	30	1.94
15390--15696	154	2.0	154	97	1	580	27	14	17	41	1.87
18291--18329	20	2.0	20	84	0	51	23	7	23	46	1.78
25018--25074	21	2.7	21	86	2	78	28	24	21	26	1.99
24999--25070	21	3.5	20	81	9	74	30	25	18	26	1.98
26628--26692	21	3.1	21	88	0	94	10	40	16	32	1.84
27739--27948	65	3.3	63	81	11	230	30	23	19	26	1.98
27920--27968	19	2.6	19	84	9	57	24	28	20	26	1.99
32633--32666	14	2.4	14	90	9	52	14	29	0	55	1.40
33797--33957	60	2.7	60	78	3	189	31	25	5	37	1.79
36371--36432	31	2.0	31	87	6	90	41	16	4	37	1.69
37022--37115	28	3.2	28	70	14	82	36	17	11	35	1.86
39973--40024	21	2.5	21	81	3	61	38	19	25	17	1.93
40013--40120	20	5.3	20	80	2	108	32	25	17	25	1.97
39992--40122	61	2.1	61	80	2	147	32	24	19	22	1.97
40075--40127	20	2.7	20	84	0	70	26	26	18	28	1.98
40336--40395	27	2.2	27	84	3	75	43	28	6	21	1.78
40644--40710	19	3.5	19	85	2	89	47	25	16	10	1.78
40706--40890	19	10.1	19	74	14	147	12	21	21	44	1.84
40714--40795	39	2.1	38	93	2	137	12	19	20	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40725--40806	39	2.1	39	84	6	105	9	20	25	43	1.82
40778--40865	33	2.6	33	89	1	131	11	23	25	39	1.88
40833--40882	20	2.5	20	83	6	57	14	24	22	40	1.90
42889--43011	42	2.9	42	80	2	122	22	36	17	22	1.95
42945--43011	21	3.2	21	66	6	55	23	35	20	19	1.95
44360--44395	14	2.6	14	95	0	63	30	0	25	44	1.54
44573--44723	19	8.7	19	65	21	89	14	22	21	41	1.89
44577--44703	33	3.9	32	86	8	184	14	22	20	42	1.88
44570--44702	66	2.0	66	95	0	239	15	22	20	41	1.90
48264--48319	20	2.8	20	94	0	94	37	23	23	16	1.93
48342--48416	33	2.3	33	88	0	105	13	21	21	44	1.86
48504--48540	14	2.6	14	86	0	56	48	21	0	29	1.50
52258--52340	21	3.8	21	74	16	62	16	24	37	21	1.94
52280--52341	22	2.8	22	82	9	72	19	24	35	20	1.96
59973--60039	19	3.5	19	83	4	80	37	22	23	16	1.94
59973--60028	20	2.9	19	86	5	85	35	21	25	17	1.95
60028--60085	14	3.9	14	79	16	71	48	25	17	8	1.75
60012--60090	32	2.4	33	95	2	142	46	24	18	10	1.80
60097--60178	18	4.6	19	79	14	104	14	20	19	45	1.85
60163--60217	20	2.8	19	83	8	65	16	23	23	36	1.94
60100--60205	51	2.1	50	84	7	133	16	21	19	42	1.89
60699--60743	18	2.5	18	88	0	72	13	15	44	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62062--62099	20	1.9	20	88	0	58	50	21	15	13	1.78
62363--62406	22	2.0	22	95	0	79	18	15	45	20	1.85
62594--62646	20	2.7	20	93	0	88	24	18	28	28	1.98
62657--62749	20	4.6	20	78	4	96	17	24	18	39	1.91
62639--62749	41	2.7	41	94	4	188	17	22	18	42	1.89
63541--63598	28	2.1	28	83	6	73	36	18	13	31	1.90
64977--65022	2	24.0	2	86	8	69	45	0	0	54	0.99
67876--67958	30	2.8	30	92	0	139	44	24	25	6	1.76
68521--68588	31	2.1	33	86	5	95	51	4	5	38	1.46
68989--69063	31	2.4	31	88	0	105	24	24	14	37	1.93
76753--76813	27	2.3	27	97	0	113	26	14	31	27	1.95
79541--79603	32	2.0	32	84	3	83	36	19	9	34	1.84
89223--89283	32	2.0	32	87	9	92	16	6	8	68	1.35
94111--94240	51	2.5	51	93	0	224	32	11	14	41	1.82
94795--95091	148	2.0	148	100	0	594	27	18	18	35	1.94
104175--104256	21	3.9	21	75	7	67	15	20	36	26	1.93
113005--113045	20	2.0	21	85	4	57	53	0	0	46	1.00
113001--113061	29	2.1	28	87	3	86	52	0	0	47	1.00
113555--113701	59	2.5	58	78	12	140	35	17	4	43	1.68
116597--116652	29	2.0	29	85	3	78	46	1	1	50	1.22
119721--119800	40	2.0	40	82	4	99	43	7	10	38	1.66
120077--120130	23	2.3	23	83	3	63	9	11	18	61	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120816--120910	48	2.0	48	93	0	163	25	16	8	49	1.74
126290--126323	18	1.9	17	88	5	50	29	0	5	64	1.17
129284--129314	2	15.5	2	100	0	62	48	0	0	51	1.00
129414--129504	23	4.0	23	88	0	137	28	26	27	17	1.98
134615--134659	23	2.0	23	90	0	72	28	26	26	17	1.98
136871--136931	2	32.5	2	79	12	67	52	0	0	47	1.00
136871--136972	46	2.3	44	89	3	150	51	0	0	48	1.00
137036--137117	36	2.3	35	89	2	128	15	40	12	31	1.85
144581--144606	12	2.2	12	100	0	52	23	46	7	23	1.78
145764--145804	20	2.2	20	86	8	59	39	4	2	53	1.35
146569--146666	21	4.8	20	76	6	79	38	22	17	21	1.93
146633--146862	20	11.5	20	81	5	223	36	24	18	20	1.94
147545--147591	24	2.0	24	91	8	78	25	17	21	36	1.94
147766--147790	12	2.1	12	100	0	50	72	0	28	0	0.86
150051--150278	67	3.4	67	76	13	227	45	19	21	14	1.85
150112--150284	51	3.3	52	94	4	305	44	17	23	15	1.86
150070--150278	33	6.2	33	77	12	228	45	18	21	13	1.84
150274--150386	53	2.2	52	98	1	217	13	23	17	45	1.84
150293--150386	19	5.2	19	83	13	135	13	22	17	46	1.83
150302--150398	19	5.3	19	80	13	78	15	21	16	46	1.84
150497--150533	14	2.6	14	91	0	65	45	21	0	32	1.52
152471--152627	19	8.8	19	79	13	163	47	22	19	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152549--152605	14	3.7	14	77	20	60	45	22	21	10	1.82
152530--152622	33	2.8	33	95	0	168	47	21	20	10	1.80
152623--152751	19	7.3	19	74	17	116	8	16	28	46	1.76
152623--152715	33	2.8	32	90	4	141	7	17	27	47	1.74
152799--153359	93	6.1	93	98	0	1090	46	19	12	21	1.83
152799--153359	185	3.0	186	98	0	1090	46	19	12	21	1.83
152799--153359	278	2.0	279	98	0	1090	46	19	12	21	1.83
155056--155152	20	5.2	20	71	18	91	47	17	23	11	1.80
155054--155118	21	3.1	21	80	4	87	49	15	24	10	1.76
155103--155159	14	3.7	14	75	20	60	43	22	24	8	1.81
155095--155175	33	2.5	33	97	2	155	46	19	23	9	1.80
155192--155248	14	3.7	14	75	20	60	8	24	22	43	1.81
155176--155256	33	2.5	33	95	0	144	8	22	22	46	1.78
155232--155287	21	2.8	20	86	5	76	12	26	17	42	1.85
155233--155309	20	3.8	21	82	6	104	11	25	16	45	1.82
155232--155308	40	1.9	41	94	2	138	12	25	16	44	1.84
155387--155457	33	2.2	33	92	0	115	47	18	22	11	1.80
155639--155693	22	2.5	22	81	0	74	20	16	40	23	1.91
155840--156033	20	9.6	20	82	5	221	19	19	25	35	1.95
155840--156033	60	3.2	60	83	0	253	19	19	25	35	1.95
156020--156102	21	4.0	21	71	6	69	26	16	22	33	1.96
170027--170064	15	2.5	15	86	0	58	55	5	0	39	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174237--174333	30	3.2	30	76	5	97	42	2	12	43	1.54
177260--177334	37	2.0	37	85	10	100	29	13	14	42	1.84
180162--180224	32	2.0	32	100	0	126	39	19	3	38	1.67
184618--184675	31	1.9	30	92	3	98	48	3	0	48	1.18
187897--187931	16	2.2	16	90	10	54	48	2	0	48	1.16
188677--188753	29	2.6	29	75	17	79	59	3	16	19	1.52
191177--191236	32	1.9	32	82	3	77	50	11	6	31	1.65
199827--199879	23	2.3	23	93	0	88	58	5	0	35	1.22
201027--201069	18	2.4	18	100	0	86	58	4	11	25	1.52
201524--201561	14	2.9	13	85	11	51	65	7	7	18	1.43

Tables:   1   2   3