genome.fa.s9274.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009274.1 Hibiscus syriacus cultivar Beakdansim tig00112957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  585551

Tables:   1   2   3   

This is table  2  of  3  ( 326 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203724--203776	27	2.0	27	85	7	72	58	15	7	18	1.60
229505--229557	24	2.2	25	83	10	65	47	1	0	50	1.12
232710--232760	18	2.8	18	93	0	84	23	21	27	27	1.99
233068--233109	15	2.8	15	96	0	75	33	7	21	38	1.81
233439--233518	31	2.5	32	83	4	99	53	11	7	27	1.63
234516--234556	18	2.3	18	86	0	64	43	2	4	48	1.37
235246--235280	16	2.1	16	89	5	52	60	0	5	34	1.21
235268--235361	31	3.1	30	72	4	89	70	3	9	17	1.28
236695--236753	3	20.3	3	93	6	95	69	0	1	28	0.98
236760--236961	37	5.2	36	73	18	135	48	7	0	43	1.39
236865--236962	45	2.2	44	89	7	146	46	7	1	44	1.37
239579--239613	16	2.2	16	94	0	61	20	25	25	28	1.99
241515--241758	124	2.0	124	91	3	402	40	18	13	28	1.88
245535--245587	21	2.4	22	84	12	65	54	0	9	35	1.33
247397--247425	14	2.0	15	93	6	51	34	10	0	55	1.34
248169--248218	23	2.2	23	85	7	66	14	14	12	60	1.60
248502--248896	200	2.0	202	90	2	625	32	10	12	44	1.76
250311--250354	21	2.1	21	91	4	72	22	9	29	38	1.85
250695--250888	98	2.0	97	90	1	307	38	13	17	30	1.88
256422--256754	165	2.0	166	96	1	614	34	16	10	38	1.83
260204--260255	13	4.0	13	82	0	68	30	19	23	26	1.98
269106--269152	20	2.4	19	82	10	58	31	19	19	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270027--270080	10	5.0	10	76	12	54	72	0	24	3	1.01
270197--270318	7	17.4	7	67	21	60	28	0	27	44	1.55
270201--270289	21	4.2	20	77	7	79	30	0	23	46	1.53
270197--270324	14	9.1	14	72	10	73	28	0	26	44	1.55
275685--276620	311	3.0	311	99	0	1865	39	9	15	35	1.80
277430--277473	2	22.0	2	100	0	88	50	0	0	50	1.00
278332--278383	17	3.2	17	75	10	54	32	3	13	50	1.60
279405--279467	27	2.4	24	76	23	65	49	4	0	46	1.23
286812--286896	32	2.8	32	85	8	106	31	16	17	34	1.93
286812--286924	31	3.7	32	80	14	114	31	16	17	33	1.93
287765--287815	21	2.4	21	83	0	66	25	21	23	29	1.99
289106--289131	3	8.7	3	100	0	52	69	0	30	0	0.89
292483--292509	2	13.5	2	100	0	54	51	0	0	48	1.00
294199--294239	21	2.0	20	86	9	57	26	2	2	68	1.15
297480--297524	16	2.7	17	79	6	56	28	2	0	68	1.01
298440--298539	41	2.4	41	93	0	164	30	24	16	30	1.96
299871--299909	16	2.4	16	87	8	53	30	5	0	64	1.15
299882--299937	23	2.4	23	82	11	62	25	5	0	69	1.09
299871--299927	13	4.3	13	79	2	60	28	5	0	66	1.13
299904--299938	14	2.5	14	86	13	54	20	5	0	74	1.02
301234--301272	3	13.3	3	89	5	62	33	0	2	64	1.08
304415--304444	12	2.5	12	94	0	51	40	23	20	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307428--307460	15	2.3	15	94	5	59	42	9	27	21	1.83
310635--310679	13	3.6	13	75	19	51	15	4	8	71	1.28
317322--317352	16	1.9	16	93	0	53	41	3	3	51	1.34
317213--317506	150	2.0	150	86	2	414	29	14	16	39	1.88
317503--317586	42	1.9	44	83	7	109	46	3	7	42	1.48
317675--317711	2	18.0	2	94	5	65	48	0	2	48	1.15
317709--317778	10	7.4	10	73	19	53	30	5	2	61	1.34
317709--317743	3	11.0	3	88	11	52	31	2	2	62	1.24
317760--317793	14	2.4	14	90	9	52	20	5	0	73	1.04
323921--323963	21	2.0	21	90	0	68	34	25	18	20	1.96
327834--327918	27	3.1	27	96	0	152	30	15	11	42	1.83
328069--328815	265	2.9	249	86	9	951	28	13	18	39	1.88
328867--328896	10	3.0	10	90	0	51	23	60	10	6	1.52
329041--329070	15	2.0	15	93	0	51	76	6	6	10	1.15
329193--329239	18	2.7	17	86	3	67	31	29	6	31	1.83
330073--330135	21	3.0	21	75	9	65	52	3	1	42	1.27
331309--331357	18	2.6	19	78	15	57	59	0	0	40	0.98
331703--331844	70	2.0	70	95	0	257	46	12	9	31	1.73
335608--335646	20	2.0	20	95	5	71	30	2	0	66	1.05
343915--343975	3	20.0	3	96	3	113	32	0	65	1	1.02
344561--344732	55	3.0	57	79	11	190	31	22	4	41	1.74
344852--345005	60	2.6	60	82	4	184	43	3	20	32	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345645--345695	23	2.2	23	85	0	66	56	13	17	11	1.66
349394--349465	23	3.1	22	72	7	63	47	18	11	23	1.80
349462--349542	41	2.0	40	90	2	126	56	17	8	17	1.64
349452--349549	41	2.3	43	75	15	112	58	17	8	16	1.62
351748--351789	21	2.0	21	81	9	50	33	7	2	57	1.39
351824--351882	30	2.0	28	87	12	84	35	1	0	62	1.05
355993--356044	3	17.7	3	80	4	52	38	0	0	61	0.96
357849--358078	125	1.8	124	84	6	313	37	8	8	45	1.65
358042--358102	31	2.0	31	83	3	79	49	1	0	49	1.10
360132--360173	7	6.0	7	81	8	50	16	14	14	54	1.71
360135--360173	15	2.7	15	88	4	53	17	12	12	56	1.67
364299--364870	115	5.0	115	93	0	930	34	14	20	30	1.93
366797--367060	54	4.9	54	95	0	393	36	17	25	20	1.95
367424--367483	22	2.7	22	92	0	93	35	20	13	31	1.91
368337--368542	37	5.6	37	72	5	134	29	17	14	38	1.89
368336--368542	73	2.8	71	91	5	342	29	17	14	38	1.89
368712--368942	76	3.0	76	92	0	372	24	19	20	35	1.96
368959--369709	112	6.6	112	89	3	999	39	14	17	28	1.89
370014--370065	3	17.7	3	80	4	52	38	0	0	61	0.96
371730--371785	23	2.7	19	78	15	58	28	3	1	66	1.19
371727--371786	11	5.5	11	75	18	54	28	3	1	66	1.17
371914--372143	125	1.8	124	81	6	286	38	7	8	45	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376499--376552	24	2.2	25	80	9	67	33	11	5	50	1.61
381065--381185	60	2.1	54	85	8	152	43	19	14	22	1.87
381078--381189	54	2.0	57	87	10	167	43	21	12	22	1.86
381520--381558	21	1.9	20	84	5	51	35	5	7	51	1.53
383998--384056	18	3.2	18	65	21	50	33	13	10	42	1.78
383986--384059	37	2.0	37	97	0	139	32	13	12	41	1.81
384201--384270	30	2.4	29	85	2	86	45	2	8	42	1.49
384220--384279	29	2.0	30	80	3	68	50	1	6	41	1.39
385051--385107	15	3.8	15	74	21	57	49	0	0	50	1.00
386278--386319	22	1.9	22	90	9	68	52	0	2	45	1.13
396913--396937	2	12.5	2	100	0	50	52	0	0	48	1.00
400701--400733	15	2.2	15	94	0	57	6	24	15	54	1.63
402523--402548	12	2.2	12	100	0	52	42	0	7	50	1.31
402846--402972	63	2.0	63	96	0	236	48	10	3	37	1.53
412500--412547	3	16.3	3	86	4	71	60	0	4	35	1.16
415719--415754	15	2.4	15	90	0	54	44	2	0	52	1.15
416576--416618	21	2.0	21	86	0	59	30	0	18	51	1.47
419185--419217	17	1.9	17	88	11	50	45	0	3	51	1.16
424942--425186	39	6.3	39	91	0	373	29	21	29	19	1.97
425188--425229	18	2.3	18	95	0	75	21	42	14	21	1.88
434054--434091	20	1.9	20	88	0	58	21	26	10	42	1.85
434124--434230	26	4.2	26	87	4	137	35	13	22	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434124--434230	51	2.1	52	87	1	153	35	13	22	28	1.92
434599--434648	25	2.0	25	92	0	82	26	10	6	58	1.54
434615--434659	17	2.5	17	82	7	54	35	6	2	55	1.38
435419--435499	26	3.1	26	87	7	119	33	12	25	28	1.92
438616--438642	6	4.5	6	100	0	54	14	0	29	55	1.40
440211--440492	54	5.2	54	82	0	321	30	15	17	36	1.91
444828--444927	50	2.0	50	98	0	191	21	15	28	36	1.93
449536--449566	16	1.9	16	93	0	53	51	3	0	45	1.17
449945--450189	121	2.0	122	91	0	402	44	17	8	29	1.77
453865--453894	15	2.0	15	93	0	51	33	3	13	50	1.58

Tables:   1   2   3