genome.fa.s9274.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009274.1 Hibiscus syriacus cultivar Beakdansim tig00112957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  585551

Tables:   1   2   3   

This is table  3  of  3  ( 326 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454008--454037	13	2.2	14	94	5	53	66	6	0	26	1.16
454516--454572	21	2.7	21	77	0	60	22	17	29	29	1.97
455175--455238	2	32.0	2	90	0	101	48	3	1	46	1.27
457700--458010	80	3.8	80	91	2	480	31	26	21	20	1.98
460963--461002	17	2.4	17	91	8	64	27	30	27	15	1.96
462092--462128	2	19.5	2	89	10	60	48	0	0	51	1.00
465837--465876	19	2.1	19	85	4	53	35	12	35	17	1.88
468039--469377	201	6.7	201	93	1	2213	36	14	17	31	1.90
468068--469377	600	2.2	600	93	1	2212	36	14	17	31	1.90
470857--470891	3	11.7	3	87	0	52	37	28	31	2	1.72
472357--472466	51	2.1	53	79	12	122	37	18	19	25	1.94
475252--475963	203	3.5	201	80	8	655	39	14	15	30	1.87
475972--476028	23	2.4	23	73	2	60	38	15	10	35	1.82
475981--476230	87	2.9	87	93	2	448	31	14	12	41	1.83
476152--476196	23	2.0	23	90	0	72	37	17	8	35	1.81
477193--477257	31	2.1	31	94	0	112	29	12	16	41	1.85
477732--477811	33	2.6	29	78	16	97	50	2	6	41	1.41
477748--477813	33	2.0	33	93	0	114	54	1	4	39	1.30
477777--477914	42	3.2	42	80	9	120	55	2	9	32	1.44
478175--478209	16	2.2	16	89	0	52	34	14	11	40	1.82
480196--480221	10	2.6	10	100	0	52	38	0	0	61	0.96
480194--480232	16	2.5	15	88	8	60	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481192--481300	39	2.8	39	82	0	146	15	7	46	30	1.73
484612--484641	15	2.0	15	93	0	51	46	23	6	23	1.75
485732--485897	5	32.4	5	92	7	280	59	0	0	40	0.98
487679--487755	41	1.9	41	86	7	113	15	33	29	20	1.94
489694--489739	18	2.6	17	80	10	56	58	2	6	32	1.36
489767--489791	10	2.5	10	100	0	50	32	0	36	32	1.58
493663--493701	19	2.1	19	90	9	62	56	10	0	33	1.33
496225--496251	14	1.9	14	100	0	54	40	0	0	59	0.98
496388--496431	23	1.9	23	81	9	54	54	0	4	40	1.21
496410--496453	18	2.4	18	85	11	54	65	0	0	34	0.93
497082--497121	21	1.9	21	89	0	62	55	0	2	42	1.13
498438--498475	6	6.5	6	84	3	51	52	0	47	0	1.00
498443--498478	18	2.0	18	94	0	63	52	0	47	0	1.00
500101--500747	4	161.8	4	97	0	1224	51	0	24	24	1.49
501071--501109	18	2.2	18	90	0	60	10	30	25	33	1.89
503539--503590	23	2.2	24	79	3	61	42	0	21	36	1.53
503832--503892	18	3.1	19	77	13	70	26	16	29	27	1.97
508850--508901	23	2.2	24	79	3	61	42	0	21	36	1.53
509144--509203	21	3.0	20	85	11	88	25	21	28	25	1.99
509144--509199	18	2.9	19	89	7	78	21	23	30	25	1.99
513919--513995	39	2.0	39	97	0	145	33	11	18	36	1.87
514420--514475	28	2.0	28	89	3	87	28	7	14	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518094--518123	14	2.2	14	94	5	53	43	10	0	46	1.37
523439--523491	15	3.8	15	77	18	53	49	0	0	50	1.00
524845--524899	3	18.7	3	78	10	51	63	0	0	36	0.95
525226--525783	113	5.0	113	96	0	1014	30	18	12	37	1.89
525226--525783	225	2.5	225	95	0	1012	30	18	12	37	1.89
526941--526975	18	1.9	18	100	0	70	57	5	5	31	1.46
534710--534741	15	2.1	15	94	0	55	46	9	18	25	1.79
538859--538897	16	2.4	18	80	20	50	51	0	0	48	1.00
539758--539815	29	2.0	28	87	9	82	1	12	25	60	1.41
540252--540311	3	20.7	3	86	13	90	66	0	0	33	0.92
540253--540311	29	2.0	29	90	6	93	67	0	0	32	0.91
541559--541602	23	1.9	23	81	9	54	29	4	15	50	1.64
542446--542483	16	2.4	16	91	8	60	76	2	2	18	1.02
542958--543004	18	2.5	19	86	6	69	6	19	6	68	1.34
548791--548860	30	2.3	30	82	0	77	42	7	10	40	1.66
549978--550084	33	3.0	35	83	9	146	40	11	16	31	1.84
550319--550360	21	2.0	21	85	0	57	21	16	28	33	1.95
550324--550367	21	2.1	21	82	0	52	22	18	22	36	1.95
550783--550844	30	2.1	30	96	0	115	37	8	12	41	1.73
553173--553247	10	7.7	10	79	11	68	82	0	12	5	0.82
553171--553247	29	2.7	27	80	13	84	80	0	12	6	0.89
553185--553245	18	3.3	18	82	11	79	80	0	13	6	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555154--555216	30	2.1	31	87	3	92	33	9	23	33	1.87
556386--556447	20	3.3	20	64	25	53	41	14	12	30	1.83
556346--556452	33	3.0	35	86	9	155	41	11	16	30	1.84
556666--556706	21	2.0	21	95	0	73	21	12	29	36	1.90
556671--556714	21	2.1	21	86	0	61	22	15	22	38	1.92
562598--562641	21	2.0	21	83	12	54	47	13	34	4	1.63
563323--563391	24	2.9	24	82	0	75	14	14	14	56	1.68
563340--563428	24	3.7	24	84	0	97	13	13	12	60	1.59
563966--564039	14	5.7	13	79	12	55	9	8	18	63	1.49
563969--564025	23	2.4	24	85	2	71	8	8	21	61	1.52
563941--564039	37	2.7	36	84	7	110	11	9	17	62	1.53
563980--564033	24	2.3	23	83	3	63	11	7	16	64	1.47
572514--572621	57	1.9	57	90	3	173	47	5	9	37	1.59
572838--572922	32	2.5	33	77	7	91	30	10	23	35	1.89
573001--573067	28	2.4	28	90	2	109	11	7	34	46	1.69
573695--573882	103	1.8	104	87	1	279	46	10	11	31	1.73
577223--577307	32	2.6	33	79	3	93	22	14	23	40	1.90
578068--578145	31	2.5	33	79	6	81	11	14	28	46	1.79
578142--578188	22	2.1	22	88	0	67	12	12	23	51	1.74
584312--584429	43	2.8	41	82	11	141	40	3	5	50	1.44

Tables:   1   2   3

The End!