genome.fa.s9276.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009276.1 Hibiscus syriacus cultivar Beakdansim tig00112959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  285815

Tables:   1   2   

This is table  1  of  2  ( 240 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--830	194	4.3	197	91	6	1362	35	15	16	32	1.90
1--830	387	2.1	381	92	5	1366	35	15	16	32	1.90
2283--2350	21	3.4	18	69	21	55	36	8	35	19	1.83
2283--2380	6	16.3	6	80	0	70	36	7	34	21	1.81
2298--2384	3	29.0	3	77	0	84	35	5	34	24	1.79
2286--2376	42	2.2	42	91	0	146	35	7	35	21	1.83
2283--2380	18	5.4	18	78	0	88	36	7	34	21	1.81
3845--4181	184	1.8	184	92	0	575	36	14	16	33	1.88
6755--6818	23	2.8	23	87	0	92	35	6	20	37	1.78
6755--6827	23	3.2	23	82	7	85	34	5	20	39	1.76
6830--6868	20	2.0	20	89	0	60	25	15	10	48	1.76
7182--7254	23	3.2	24	86	7	98	34	4	20	41	1.72
7517--7567	25	2.0	25	92	0	84	33	7	19	39	1.81
7815--7851	18	2.1	18	89	0	56	32	5	10	51	1.60
7807--7853	24	2.0	24	86	0	67	34	4	14	46	1.64
8110--8196	39	2.2	39	95	0	156	48	20	13	17	1.81
8600--8661	21	2.8	23	85	7	83	35	6	20	37	1.79
8624--8675	21	2.5	21	87	6	70	34	1	21	42	1.64
15963--16021	23	2.6	23	86	0	82	22	27	25	25	2.00
15985--16029	23	2.0	23	86	0	63	20	24	24	31	1.98
21236--21294	23	2.6	23	77	0	73	16	28	25	28	1.97
24191--24242	21	2.5	20	81	3	59	34	15	21	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35606--35698	39	2.3	40	88	1	152	36	9	7	46	1.65
35839--35995	21	7.8	20	72	7	84	38	24	17	19	1.92
35962--36155	20	9.6	20	81	5	221	35	25	19	19	1.95
35962--36155	60	3.2	60	83	0	253	35	25	19	19	1.95
36654--36763	21	5.8	20	72	17	99	45	17	24	12	1.83
36653--36763	41	2.9	41	83	12	139	45	17	25	12	1.83
36714--36770	14	3.7	14	75	20	60	43	22	24	8	1.81
36706--36786	33	2.5	33	95	0	144	46	22	22	8	1.78
36782--36879	19	5.7	19	70	22	90	10	23	22	43	1.83
36804--36893	14	5.7	14	72	23	72	8	24	23	43	1.82
36787--36901	33	3.5	33	97	0	221	9	23	20	46	1.80
38598--39066	93	5.1	93	99	0	922	21	12	19	46	1.83
39114--39242	19	7.3	19	73	17	107	46	27	17	9	1.78
39155--39242	33	2.7	33	91	3	133	46	27	19	6	1.75
39130--39242	52	2.2	51	81	9	131	47	26	17	7	1.75
39238--39357	19	6.6	19	79	12	126	10	18	25	45	1.80
39238--39357	52	2.2	56	86	7	167	10	18	25	45	1.80
39238--39357	33	3.3	38	84	10	144	10	18	25	45	1.80
41278--41313	14	2.6	14	95	0	63	33	0	22	44	1.53
41420--41517	19	5.4	19	84	13	143	45	17	22	14	1.84
41420--41536	53	2.2	53	98	1	227	44	17	23	13	1.85
41526--41766	19	13.7	19	78	17	270	14	20	17	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41550--41738	52	3.6	52	97	0	351	14	21	16	47	1.82
41532--41780	33	7.2	33	76	14	218	14	20	18	46	1.83
44273--44319	24	2.0	24	87	8	69	38	21	14	25	1.92
45002--45251	20	12.5	20	86	1	250	19	18	24	37	1.94
45238--45320	21	4.0	21	73	6	78	25	16	24	33	1.96
45218--45316	42	2.4	43	77	11	100	21	18	23	37	1.94
45595--45637	13	3.2	13	84	12	59	48	0	2	48	1.14
45597--45637	14	2.9	15	80	20	52	48	0	2	48	1.14
46136--46225	47	1.9	47	86	4	128	23	12	18	45	1.83
49318--49370	24	2.2	24	96	0	97	30	13	26	30	1.94
50021--50109	28	3.1	28	80	6	99	38	12	11	38	1.79
50196--50272	31	2.5	31	95	0	136	46	9	7	36	1.64
51510--51546	15	2.5	15	95	0	65	8	18	67	5	1.36
54976--55060	2	42.5	2	100	0	170	50	0	0	49	1.00
58157--58203	23	2.1	22	88	4	67	25	0	27	46	1.53
60774--60798	3	8.3	3	100	0	50	32	0	0	68	0.90
67705--67884	65	2.8	63	80	9	159	28	18	24	28	1.98
67724--67884	65	2.5	65	84	5	202	28	18	23	29	1.98
67725--67934	65	3.3	62	78	11	176	27	18	23	30	1.98
68139--68182	21	2.1	21	100	0	88	40	9	9	40	1.68
68988--69031	21	2.1	21	83	8	54	38	15	34	11	1.84
70576--70655	22	3.6	22	79	5	99	23	25	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70554--70674	43	2.8	42	77	14	131	23	22	27	27	1.99
70580--70674	21	4.4	21	77	9	86	24	22	26	27	2.00
76478--76687	65	3.3	63	76	13	171	28	18	22	30	1.97
77482--77511	14	2.1	14	93	6	51	20	3	0	76	0.92
82337--82371	15	2.3	15	100	0	70	37	11	31	20	1.88
83036--83198	65	2.5	64	82	3	211	26	15	26	30	1.96
83146--83196	19	2.7	19	85	8	70	25	15	35	23	1.94
84686--84803	44	2.7	42	76	8	119	26	18	25	29	1.98
88104--88150	20	2.2	21	78	17	53	44	6	12	36	1.68
88738--88777	20	2.0	21	85	9	57	27	12	5	55	1.58
90217--90321	45	2.3	46	88	4	151	30	16	22	30	1.96
90305--90355	19	2.7	19	85	8	70	25	15	35	23	1.94
96408--96448	20	2.0	21	85	9	57	82	0	7	9	0.83
96413--96449	12	3.2	12	96	3	67	86	0	5	8	0.70
96413--96486	24	3.1	24	75	9	71	78	0	14	6	0.95
96468--96550	14	6.3	14	75	15	70	71	0	19	9	1.13
96468--96567	27	3.7	27	76	10	89	71	0	19	10	1.14
97645--97804	65	2.5	65	83	7	193	28	17	23	31	1.97
98327--98356	2	15.0	2	100	0	60	50	0	0	50	1.00
100587--100638	23	2.3	23	100	0	104	25	21	26	26	1.99
103258--103296	19	2.1	19	100	0	78	33	35	5	25	1.78
107508--107658	37	4.1	37	91	3	216	37	20	17	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107675--108139	55	8.7	55	82	3	497	30	16	24	29	1.96
107669--108136	106	4.4	105	81	7	516	30	15	24	29	1.96
118699--118730	15	2.1	15	94	0	55	12	15	25	46	1.81
119234--119259	3	8.7	3	100	0	52	34	0	0	65	0.93
119342--119392	19	2.6	19	90	9	77	43	25	17	13	1.86
119342--119619	20	13.6	20	74	11	118	39	19	22	18	1.93
119467--119617	40	3.7	40	85	5	212	36	17	24	21	1.94
119446--119637	103	1.9	103	86	2	278	38	17	23	21	1.93
119463--119617	83	1.9	79	88	6	222	37	16	24	21	1.94
119727--119824	6	16.5	6	95	1	135	30	53	12	4	1.57
120511--120584	6	12.5	6	98	1	141	0	16	51	32	1.45
120662--120701	20	2.0	20	90	0	62	12	17	17	52	1.74
120692--120885	20	9.4	20	84	5	226	18	26	18	36	1.94
120694--120885	40	4.7	40	84	5	249	18	26	18	36	1.94
120707--120885	83	2.2	83	90	0	286	19	25	18	36	1.94
120692--120989	20	14.6	20	77	7	170	17	23	19	39	1.92
120939--120989	19	2.6	20	90	3	77	15	17	23	43	1.88
122334--122388	27	2.0	27	96	0	101	32	9	18	40	1.82
122341--122396	27	2.1	27	86	0	76	37	5	17	39	1.73
122941--122970	15	2.0	15	93	0	51	53	3	0	43	1.17
123473--123553	35	2.3	35	82	4	101	20	6	29	43	1.76
131821--131918	21	4.8	20	76	6	79	38	22	17	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131885--132078	20	9.6	20	81	5	221	35	25	19	19	1.95
131885--132078	60	3.2	60	83	0	253	35	25	19	19	1.95
132461--132531	33	2.2	33	92	0	115	11	22	18	47	1.80
132610--132687	41	1.9	41	97	0	147	44	16	25	12	1.83
132611--132686	21	3.7	21	83	3	109	46	17	25	11	1.82
132706--132833	19	7.1	19	71	19	87	10	25	18	45	1.82
132728--132784	14	3.7	14	75	20	60	8	24	22	43	1.81
132711--132833	33	3.5	33	88	10	165	10	24	18	46	1.81
132769--132833	21	3.1	21	82	4	96	10	26	15	47	1.78
134530--135091	93	6.1	93	98	0	1090	22	12	19	46	1.83

Tables:   1   2