genome.fa.s9281.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009281.1 Hibiscus syriacus cultivar Beakdansim tig00112968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  390849

Tables:   1   2   

This is table  2  of  2  ( 204 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256482--256558	35	2.2	34	88	4	109	15	16	5	62	1.50
257025--257216	99	1.9	99	89	0	294	35	16	17	30	1.92
258209--258520	156	2.0	154	83	2	392	35	22	15	25	1.94
258470--258645	65	2.8	64	83	4	225	38	18	14	28	1.90
258604--258828	124	1.8	124	88	0	342	35	23	14	27	1.93
258902--259480	85	6.8	85	85	1	701	33	21	19	26	1.97
261784--261832	21	2.3	21	82	10	55	20	6	2	71	1.18
261801--261843	22	1.9	23	90	4	70	18	4	0	76	0.95
263481--263548	35	1.9	35	85	5	93	22	11	17	48	1.79
267372--267407	18	2.1	18	89	5	56	27	16	22	33	1.95
267373--267529	66	2.4	64	84	8	185	29	19	22	28	1.98
267720--267752	12	2.5	13	90	9	50	39	9	15	36	1.79
267879--267975	2	51.5	2	88	11	152	49	0	0	50	1.00
269797--269878	23	3.6	22	77	8	85	25	24	25	24	2.00
269797--269859	21	2.9	22	80	4	74	22	25	25	26	2.00
272807--273117	155	2.0	155	99	0	613	38	18	9	33	1.83
276320--276780	201	2.3	199	84	8	576	31	12	17	38	1.87
281124--281157	18	1.9	17	88	5	50	41	0	5	52	1.25
286621--286674	5	10.6	5	78	21	51	79	1	1	16	0.91
286652--286676	12	2.1	12	100	0	50	76	0	0	24	0.80
286613--286676	24	2.7	23	83	13	76	79	3	1	15	0.93
286745--287076	75	4.3	73	82	12	257	43	6	3	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286781--287078	39	7.7	39	79	12	312	42	6	4	46	1.49
286792--287035	119	2.1	119	86	10	342	43	4	4	47	1.45
286911--287075	37	4.4	37	82	11	174	43	7	4	45	1.51
287062--287140	2	39.5	2	100	0	158	49	0	0	50	1.00
287684--289037	84	16.4	83	83	5	1572	23	18	23	34	1.96
287750--289037	493	2.6	493	88	2	1899	23	18	23	33	1.97
290821--290857	15	2.5	15	86	0	56	83	0	13	2	0.74
292466--292548	41	2.0	41	97	0	157	32	18	12	37	1.87
292713--292743	15	2.1	15	93	0	53	77	0	3	19	0.90
294097--294165	23	2.9	24	82	16	74	78	4	4	13	1.05
294221--294267	2	24.5	2	82	8	62	46	2	0	51	1.13
294284--294421	38	3.6	38	81	12	167	44	7	2	44	1.48
294284--294424	76	1.9	76	86	8	207	44	7	2	44	1.47
294408--294439	2	16.0	2	100	0	64	50	0	0	50	1.00
295016--295089	27	2.6	28	91	8	114	59	2	5	32	1.34
295016--295100	27	2.9	29	84	12	111	61	2	7	29	1.35
301118--301179	28	2.1	30	85	5	83	54	1	3	40	1.26
307383--307432	24	2.2	23	82	10	59	38	0	6	56	1.24
307383--307431	25	2.0	24	88	4	71	36	0	6	57	1.24
307522--307546	13	1.9	13	100	0	50	48	24	20	8	1.76
319800--320231	45	9.7	45	83	6	459	23	15	19	41	1.90
320946--321752	135	6.0	133	86	2	1019	30	19	18	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321685--321778	40	2.3	40	90	0	143	30	20	20	28	1.97
321725--322070	134	2.6	134	81	3	392	30	18	19	31	1.96
322296--322336	12	3.4	12	83	12	57	34	0	4	60	1.18
331645--331689	22	2.2	20	84	8	54	33	15	22	28	1.95
332014--332337	55	5.9	54	87	2	416	36	18	17	28	1.93
332014--332337	165	2.0	164	88	0	486	36	18	17	28	1.93
338150--338197	22	2.2	22	100	0	96	31	8	29	31	1.87
338972--339282	55	5.7	55	88	1	446	33	17	19	29	1.95
342149--342259	2	55.5	2	100	0	222	49	0	0	50	1.00
343042--343083	22	2.0	22	90	4	68	47	38	0	14	1.44
343772--343804	6	5.7	6	96	3	59	69	0	12	18	1.18
343840--343938	36	2.8	37	72	15	100	50	6	1	42	1.33
343842--344139	37	8.0	37	76	13	170	44	8	2	43	1.48
344662--345416	201	3.8	201	85	2	914	27	22	19	31	1.97
346306--346362	21	2.7	21	88	0	87	26	19	15	38	1.92
346409--346458	21	2.4	21	93	3	84	22	18	18	42	1.90
346475--346522	20	2.4	20	96	0	87	39	20	2	37	1.65
349237--349289	20	2.7	20	82	5	63	37	16	9	35	1.82
354149--354187	17	2.4	17	91	4	62	48	5	0	46	1.24
354302--354327	9	2.9	9	100	0	52	23	7	23	46	1.78
356438--356505	6	11.7	6	93	1	77	50	0	0	50	1.00
356451--356491	3	13.7	3	84	0	55	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358810--359105	38	7.7	38	83	11	263	45	8	2	43	1.44
358806--359094	77	3.8	75	80	11	293	46	7	1	43	1.42
358810--359105	76	3.9	74	82	10	312	45	8	2	43	1.44
359131--359178	2	25.5	2	87	12	75	50	0	0	50	1.00
359162--359319	37	4.2	37	76	14	139	43	8	2	45	1.48
359162--359314	36	4.1	36	77	12	132	43	8	2	45	1.48
363254--363333	40	2.0	40	85	7	108	40	0	15	45	1.46
365081--365106	5	5.2	5	100	0	52	19	0	0	80	0.71
367937--367969	16	2.1	16	94	0	57	57	21	12	9	1.62
368034--368076	10	4.7	10	78	21	58	58	20	11	9	1.61
368038--368070	16	2.1	16	100	0	66	57	24	12	6	1.57
369170--369225	14	4.3	14	76	17	66	51	26	12	8	1.69
369163--369224	24	2.6	24	92	0	97	53	25	11	9	1.67
372078--372103	13	2.0	13	100	0	52	38	0	0	61	0.96
372183--372274	26	3.5	25	67	19	62	40	2	9	47	1.49
373526--373574	25	2.0	25	83	0	62	75	2	4	18	1.06
376357--376406	2	25.0	2	100	0	100	50	0	0	50	1.00
377732--378266	145	3.7	145	77	5	472	32	21	24	21	1.98

Tables:   1   2

The End!