genome.fa.s9288.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009288.1 Hibiscus syriacus cultivar Beakdansim tig00112981_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  633898

Tables:   1   2   3   

This is table  2  of  3  ( 356 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231732--231908	59	3.0	59	87	6	236	28	22	17	31	1.97
232057--232116	22	2.7	22	100	0	120	48	13	3	35	1.59
235384--235442	29	2.0	29	96	0	109	25	16	6	50	1.70
244671--244924	59	4.3	58	86	4	269	30	23	17	28	1.97
249270--249315	19	2.4	19	79	13	58	19	4	2	73	1.10
252386--252428	15	3.0	14	86	6	59	20	4	2	72	1.14
255834--255859	9	2.9	9	100	0	52	30	0	0	69	0.89
260942--261011	24	2.9	24	76	0	68	44	17	12	25	1.84
261708--261774	28	2.3	29	85	10	93	44	22	4	28	1.72
261752--261832	29	2.8	29	92	1	126	45	20	6	27	1.75
261847--261904	5	10.8	5	77	14	53	8	20	50	20	1.75
261840--261906	22	3.3	21	80	20	88	13	20	46	19	1.83
261852--261899	17	2.8	17	96	0	87	8	20	50	20	1.74
262647--262679	3	11.0	3	100	0	66	33	0	0	66	0.92
264211--264246	18	1.9	19	88	5	56	27	22	22	27	1.99
270960--271004	21	2.1	21	83	0	54	46	0	2	51	1.13
270978--271075	35	2.8	36	77	10	103	41	0	3	55	1.15
294409--294453	23	2.0	22	83	12	56	31	0	4	64	1.13
294423--294461	18	2.2	18	95	4	71	33	0	2	64	1.08
300244--300274	16	1.9	16	93	0	53	64	6	0	29	1.18
301184--301301	50	2.3	50	78	9	123	21	28	29	20	1.98
303522--303565	19	2.3	19	100	0	88	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304916--304973	29	2.1	28	83	6	73	39	12	6	41	1.69
305273--305344	24	3.0	24	91	0	126	29	8	16	45	1.76
306520--306583	25	2.4	26	82	12	76	37	1	21	39	1.63
311032--311067	18	2.0	18	100	0	72	38	11	16	33	1.84
312890--313465	55	10.7	53	73	16	332	27	20	19	32	1.97
313051--313452	165	2.4	164	81	5	472	27	21	19	31	1.98
319813--319848	18	2.0	18	100	0	72	38	11	16	33	1.84
321672--322247	55	10.7	53	73	16	345	26	21	19	32	1.97
321836--322234	162	2.4	163	83	5	477	26	23	20	29	1.98
321825--322280	110	4.2	110	79	5	460	26	22	19	31	1.98
328040--328075	17	2.1	18	89	5	56	61	2	0	36	1.11
329302--330834	765	2.0	767	99	0	3025	25	19	21	33	1.97
337429--338054	55	11.6	55	75	9	425	26	21	19	32	1.97
337651--338058	216	1.9	217	83	5	540	27	21	19	31	1.97
337539--338054	271	1.9	271	83	5	666	26	21	19	32	1.97
337552--338054	55	9.2	55	79	6	452	27	21	19	31	1.97
338682--338740	31	1.9	31	89	0	91	40	5	10	44	1.60
338765--338807	22	2.0	22	100	0	86	51	13	0	34	1.42
338767--338815	22	2.2	22	88	3	71	55	14	0	30	1.40
338755--339001	54	4.6	54	98	0	485	52	12	0	35	1.39
338787--339228	32	16.4	31	66	32	215	52	12	0	34	1.40
338819--338861	22	2.0	22	100	0	86	51	13	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338821--338869	22	2.2	22	88	3	71	55	14	0	30	1.40
338873--338915	22	2.0	22	95	0	77	51	11	0	37	1.39
338875--338923	22	2.2	22	85	3	62	55	12	0	32	1.37
338927--338969	22	2.0	22	100	0	86	51	13	0	34	1.42
338929--338977	22	2.2	22	88	3	71	55	14	0	30	1.40
339052--339098	22	2.1	22	88	7	69	57	6	0	36	1.24
339012--339228	54	4.1	54	85	9	322	53	12	0	34	1.39
339061--339151	22	4.0	22	78	10	101	53	15	0	30	1.42
338981--339206	102	2.2	102	95	0	407	52	14	0	32	1.42
339163--339205	22	2.0	22	90	0	68	51	11	0	37	1.39
339208--339357	15	10.5	15	84	7	197	52	3	0	44	1.17
339275--339378	45	2.4	44	86	3	138	50	3	0	45	1.19
339338--339392	26	2.0	27	89	6	85	49	7	0	43	1.30
340261--340304	2	22.0	2	100	0	88	50	0	0	50	1.00
340489--340524	2	18.0	2	100	0	72	50	0	0	50	1.00
344732--344756	8	3.1	8	100	0	50	12	0	0	88	0.53
344741--344798	23	2.6	23	79	12	59	20	1	1	75	0.97
344812--344852	18	2.4	17	87	4	55	14	12	0	73	1.11
344902--344961	3	20.0	3	100	0	120	33	0	0	66	0.92
349294--349644	95	3.7	94	90	4	539	32	17	18	31	1.94
350916--351002	36	2.5	34	81	9	95	29	20	14	34	1.93
350941--351018	21	4.1	20	74	19	76	28	17	15	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351023--351097	29	2.6	29	93	0	132	33	16	12	38	1.85
351083--351241	73	2.2	73	87	1	221	25	21	13	38	1.90
351083--351241	37	4.4	36	85	3	203	25	21	13	38	1.90
351384--351503	42	2.9	42	86	3	163	32	18	15	34	1.92
351372--351748	41	9.2	40	72	13	175	32	20	15	32	1.93
354722--354848	43	3.0	42	94	3	218	26	23	18	31	1.97
355052--355173	33	3.5	34	88	7	176	42	19	8	29	1.80
355052--355173	34	3.5	34	89	5	174	42	19	8	29	1.80
355172--355697	167	3.2	167	85	4	674	30	24	20	25	1.99
355170--355697	84	6.4	83	75	5	446	30	24	20	25	1.98
356262--356315	2	28.5	2	83	10	69	46	1	0	51	1.11
357525--357580	27	2.1	26	87	9	78	19	0	1	78	0.84
357696--357728	3	11.0	3	100	0	66	33	0	0	66	0.92
361756--361823	35	1.9	35	96	0	127	23	16	11	48	1.79
370969--371050	42	1.9	43	90	2	130	28	2	17	52	1.57
371174--371246	39	1.9	36	81	13	85	52	2	0	45	1.15
371812--371871	26	2.3	26	97	0	111	13	25	20	41	1.88
373229--373355	31	4.1	31	76	5	130	32	17	18	31	1.94
373230--373353	62	2.0	62	85	4	169	30	17	19	32	1.95
373848--373880	10	3.5	10	88	12	52	54	0	39	6	1.25
379618--379645	2	14.0	2	100	0	56	50	0	0	50	1.00
380617--380740	60	2.1	60	83	3	151	33	12	12	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382042--382176	67	2.0	67	100	0	270	37	5	4	51	1.46
383052--383097	23	2.2	22	81	14	53	47	2	0	50	1.13
383083--383484	30	13.3	29	70	15	165	51	1	7	39	1.42
383150--383238	42	2.1	41	82	8	108	56	0	7	35	1.29
383190--383484	60	5.0	58	74	14	205	50	1	8	39	1.41
383083--383494	119	3.4	117	73	12	296	50	1	8	39	1.42
386064--386121	29	2.0	29	93	3	100	25	3	20	50	1.64
387479--387567	24	3.8	24	90	1	126	38	20	19	22	1.94
387500--387594	24	4.0	24	87	4	95	44	22	13	20	1.86
392819--392962	65	2.2	65	84	7	195	29	23	17	29	1.97
401104--401183	21	3.5	22	81	8	90	28	23	17	30	1.97
405189--405236	20	2.4	20	82	0	60	31	10	16	41	1.82
405277--405346	20	3.5	20	86	1	88	32	20	11	35	1.88
408070--408121	20	2.7	20	84	3	70	34	21	7	36	1.82
410210--410242	17	1.9	17	100	0	66	36	6	6	51	1.51
412212--412260	26	2.0	24	84	8	62	46	4	6	42	1.47
413354--413677	141	2.3	141	75	7	329	35	10	17	35	1.85
419328--419375	21	2.3	21	96	0	87	39	12	0	47	1.41
420282--420350	10	6.1	10	76	23	66	47	17	23	11	1.80
420285--420374	24	3.8	24	93	0	153	48	16	22	12	1.79
420295--420374	10	6.6	13	70	26	61	48	16	22	12	1.79
420355--420415	10	5.8	10	74	11	50	57	13	11	18	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421612--421769	21	7.8	20	72	7	86	38	24	17	19	1.92
421736--421929	20	9.6	20	81	5	212	35	25	19	19	1.95
421736--421929	60	3.2	60	82	0	244	35	25	19	19	1.95
422312--422382	33	2.2	33	92	0	115	11	22	18	47	1.80
422461--422570	21	5.8	20	74	17	108	45	18	24	11	1.83
422454--422570	41	3.1	38	81	14	145	46	17	25	11	1.81
422521--422577	14	3.7	14	75	20	60	43	22	24	8	1.81
422513--422593	33	2.5	33	95	0	144	46	22	22	8	1.78
422589--422686	19	5.7	19	70	22	90	10	23	22	43	1.83
422611--422700	14	5.7	14	72	23	72	8	24	23	43	1.82

Tables:   1   2   3