genome.fa.s9288.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009288.1 Hibiscus syriacus cultivar Beakdansim tig00112981_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  633898

Tables:   1   2   3   

This is table  3  of  3  ( 356 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422594--422708	33	3.5	33	97	0	221	9	23	20	46	1.80
424402--424869	93	5.1	93	98	0	904	22	12	19	46	1.83
424917--425044	19	7.3	19	74	18	116	45	28	17	8	1.78
424953--425044	33	2.8	32	90	6	141	45	28	18	7	1.76
425040--425174	19	7.6	19	75	16	128	11	19	23	45	1.82
425062--425118	14	3.7	14	77	20	60	10	21	22	45	1.82
425045--425137	33	2.8	33	95	0	168	10	20	21	47	1.80
425603--425663	21	2.9	21	72	0	68	24	36	18	21	1.95
427065--427100	14	2.6	14	95	0	63	33	0	22	44	1.53
427207--427252	20	2.3	20	96	3	85	45	17	21	15	1.85
427277--427587	33	8.9	33	71	19	222	14	22	18	45	1.84
427299--427574	19	16.4	19	69	26	189	14	21	17	46	1.84
427277--427482	52	4.0	52	92	5	334	14	22	16	46	1.83
427325--427516	26	7.0	28	64	22	102	14	22	16	46	1.82
427326--427606	64	4.3	66	78	15	273	14	21	18	45	1.85
430052--430097	24	2.0	23	83	12	58	39	21	13	26	1.90
430776--431005	20	11.5	20	84	1	228	20	18	24	36	1.94
434354--434670	157	2.0	159	96	3	586	28	16	8	46	1.76
436294--436392	38	2.6	39	73	15	98	38	22	18	21	1.93
439313--439356	18	2.4	19	85	11	65	70	4	2	22	1.17
441226--441267	22	1.9	22	85	9	59	52	9	2	35	1.47
445193--445242	24	2.1	24	96	0	91	14	18	18	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447159--447292	62	2.2	62	84	7	170	37	13	13	35	1.84
448943--449067	2	61.5	2	83	12	148	46	3	4	46	1.37
449373--449442	22	3.2	22	91	0	113	37	24	14	24	1.92
451383--451569	60	3.1	61	82	5	234	25	14	5	55	1.60
457236--457270	16	2.2	16	89	0	52	40	20	2	37	1.67
457466--457529	23	2.8	23	87	0	92	26	25	28	20	1.99
459281--459325	21	2.1	21	87	0	63	15	24	28	31	1.96
462231--462267	16	2.3	16	90	0	56	40	21	2	35	1.68
462461--462524	23	2.8	23	90	0	101	26	26	28	18	1.98
464279--464319	21	2.0	21	85	0	55	17	24	29	29	1.97
471596--471649	21	2.5	22	84	6	83	22	11	25	40	1.87
471640--471689	24	2.1	24	88	0	73	14	20	22	44	1.86
475568--475880	20	15.4	20	78	7	247	38	23	18	18	1.93
475690--475879	101	1.9	100	83	5	249	38	22	20	18	1.93
475568--475861	121	2.4	122	86	1	392	38	24	18	18	1.93
476684--476730	24	2.0	24	95	0	85	27	21	17	34	1.95
479210--479263	21	2.7	20	80	11	65	33	25	12	27	1.93
479256--479456	33	5.8	33	81	9	224	44	19	20	14	1.87
479290--479423	19	7.5	19	70	18	90	44	19	20	15	1.86
479260--479456	73	2.9	66	79	12	216	44	19	20	14	1.86
479249--479457	106	2.0	106	86	3	296	44	20	20	15	1.87
479466--479534	33	2.1	33	86	0	93	11	18	18	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479633--479669	14	2.6	14	91	0	65	45	21	0	32	1.52
481062--481145	42	2.0	42	85	0	114	23	16	38	21	1.93
481991--482087	20	4.7	20	73	12	88	21	17	23	37	1.94
481990--482087	41	2.4	42	80	1	126	22	17	23	36	1.94
482045--482087	22	2.0	22	85	0	59	23	18	20	37	1.94
482096--482148	20	2.7	20	91	5	81	13	18	24	43	1.86
485502--485633	59	2.2	59	81	11	146	38	12	12	37	1.80
489470--489503	18	1.9	18	88	5	52	20	5	26	47	1.73
494199--494224	13	2.0	13	100	0	52	69	0	0	30	0.89
495497--495561	33	2.0	32	87	3	94	40	7	18	33	1.79
495534--496125	71	8.5	71	83	5	609	39	9	21	30	1.85
495501--496214	37	20.3	36	65	13	107	39	9	20	30	1.85
495534--496134	209	2.9	210	82	5	650	39	9	21	29	1.85
495515--496160	280	2.3	279	81	6	734	39	9	20	30	1.84
496023--496223	110	1.9	106	82	10	255	39	8	20	31	1.83
504988--505038	21	2.4	21	100	0	102	37	41	3	17	1.68
511270--511374	23	4.7	22	80	9	106	25	29	23	20	1.99
511270--511353	23	3.7	23	87	1	116	26	28	23	21	1.99
514619--514665	22	2.1	22	85	14	62	51	2	0	46	1.13
514625--514684	22	2.7	21	76	21	59	53	0	1	45	1.10
514603--515269	232	2.9	226	91	5	1062	42	6	7	43	1.58
515080--515117	16	2.4	16	86	8	51	44	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523515--523580	22	2.8	24	79	6	73	6	19	3	71	1.21
524076--524143	3	22.3	3	75	19	61	67	0	0	32	0.91
524087--524144	21	2.8	21	94	2	100	70	0	0	29	0.87
524340--524717	40	8.7	45	71	13	211	25	19	29	25	1.98
524338--524747	129	3.2	129	87	2	590	25	19	30	25	1.98
524796--524872	28	2.6	28	82	13	93	49	11	12	25	1.75
524874--525056	66	2.8	63	74	8	170	38	14	20	26	1.91
525705--526137	67	6.5	67	95	2	768	45	11	11	30	1.76
525705--526137	200	2.2	201	94	2	768	45	11	11	30	1.76
526204--526341	57	2.4	56	83	7	174	44	18	10	27	1.81
526204--526329	29	4.5	28	85	9	161	42	17	10	29	1.82
526581--526684	36	3.0	36	81	4	124	35	11	20	32	1.88
526582--526700	36	3.4	36	79	6	111	36	12	21	30	1.90
526652--526883	105	2.3	100	82	8	263	36	12	19	31	1.90
527012--527042	13	2.3	14	94	5	55	19	0	0	80	0.71
527366--527431	4	17.0	4	93	6	118	24	0	25	50	1.50
528600--528650	17	3.2	17	76	18	56	1	23	5	68	1.22
531707--531768	32	2.0	32	96	3	117	61	9	14	14	1.57
534695--534759	22	2.9	22	79	4	67	6	20	3	70	1.22
535253--535320	3	22.3	3	75	19	61	67	0	0	32	0.91
535264--535321	21	2.8	21	94	2	100	70	0	0	29	0.87
541874--541934	2	30.5	2	100	0	122	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545378--545802	81	5.2	82	77	5	270	31	22	14	32	1.93
555112--555315	107	1.9	107	89	0	318	39	15	15	29	1.88
556077--556124	17	2.8	18	90	6	73	54	20	16	8	1.68
558686--558726	14	3.0	14	80	13	50	58	0	0	41	0.98
558740--558805	29	2.2	29	81	10	80	54	1	1	42	1.18
560788--560818	16	1.9	16	100	0	62	38	0	16	45	1.47
561152--561203	17	3.2	17	75	10	54	32	1	13	51	1.52
562706--562762	29	2.0	29	86	6	80	33	14	10	42	1.79
566381--566417	14	2.7	14	95	4	67	16	21	27	35	1.94
570200--570274	28	2.7	28	80	0	96	24	16	16	44	1.86
571470--571498	15	2.0	15	93	6	51	34	6	31	27	1.83
577313--577351	20	2.0	20	84	0	51	38	15	20	25	1.92
579437--579471	15	2.2	16	90	5	54	54	0	11	34	1.37
589806--589848	23	1.9	21	81	13	50	32	18	13	34	1.90
598698--598723	6	4.3	6	100	0	52	0	30	0	69	0.89
599625--600399	385	2.0	384	95	0	1381	51	14	13	21	1.76
602702--603169	151	3.1	151	93	0	758	35	15	18	30	1.92
603729--603762	17	1.9	18	88	5	52	32	0	0	67	0.91
612444--612506	21	2.9	21	85	4	81	20	36	25	17	1.94
612446--612526	21	3.8	21	75	15	67	22	37	24	16	1.93
616545--616603	3	19.3	3	96	3	109	67	0	0	32	0.91
618671--618717	15	3.1	14	76	23	51	48	0	12	38	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619656--619699	19	2.3	19	80	4	52	50	25	0	25	1.50
622615--622648	3	11.3	3	100	0	68	64	0	0	35	0.94
624403--624452	20	2.5	20	87	9	66	50	12	0	38	1.40
626401--626498	48	2.0	48	84	0	124	30	20	17	31	1.95
627515--627569	28	1.9	29	85	3	76	47	1	9	41	1.46
627693--627728	16	2.2	17	90	5	56	50	2	0	47	1.15

Tables:   1   2   3

The End!