genome.fa.s9290.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009290.1 Hibiscus syriacus cultivar Beakdansim tig00112989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  385540

Tables:   1   2   

This is table  2  of  2  ( 209 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207048--207363	123	2.6	123	90	2	510	27	18	13	40	1.88
207290--207507	113	1.9	113	89	0	337	28	19	14	37	1.91
208075--208179	54	1.9	54	92	0	174	29	20	13	36	1.91
208636--208683	17	2.5	19	77	19	55	60	2	8	29	1.37
219250--219469	46	4.8	46	93	2	354	27	14	21	36	1.92
219233--219469	92	2.6	93	89	4	390	27	13	20	37	1.91
221113--221159	23	2.0	23	87	8	67	46	6	25	21	1.74
229232--229284	20	2.6	20	82	8	63	79	0	13	7	0.93
230604--230718	55	2.1	55	86	3	160	23	14	27	33	1.94
230656--230782	65	2.0	64	90	4	202	22	16	27	33	1.96
230721--230981	55	4.8	54	79	7	217	28	18	24	29	1.98
230768--230979	55	3.9	55	84	1	237	29	17	24	28	1.97
230768--230979	110	1.9	110	82	1	264	29	17	24	28	1.97
235286--235346	19	2.9	20	83	11	61	18	26	34	21	1.96
241107--241166	21	2.8	21	89	2	93	13	25	40	21	1.89
247031--247058	8	3.5	8	100	0	56	64	0	0	35	0.94
249245--249321	3	26.0	3	77	17	81	63	0	1	35	1.03
250265--250308	17	2.6	17	88	0	70	31	27	20	20	1.97
254063--254101	20	2.0	20	89	0	60	33	23	10	33	1.88
255157--255292	45	3.0	45	92	2	229	30	22	6	40	1.79
255270--255402	31	3.8	32	74	20	133	29	24	9	36	1.87
255214--255442	76	3.0	77	91	3	383	29	23	8	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261766--261945	89	2.0	90	91	1	290	30	21	7	40	1.81
261766--261945	45	4.0	45	94	1	290	30	21	7	40	1.81
261872--261945	25	3.2	25	62	31	63	28	21	9	40	1.84
265198--265230	15	2.2	15	89	10	50	39	0	0	60	0.97
265195--265232	16	2.5	15	84	16	51	39	0	0	60	0.97
267845--267884	19	2.1	19	95	0	71	25	12	12	50	1.75
271148--271244	47	2.0	50	92	6	164	39	12	14	34	1.83
275578--275750	85	2.0	85	96	0	319	33	11	24	30	1.91
286594--286652	18	2.9	21	80	17	79	28	28	15	27	1.96
287203--287248	23	2.0	23	100	0	92	17	21	21	39	1.93
291772--292150	183	2.0	187	96	3	703	28	23	12	35	1.91
292615--292656	22	1.9	22	95	0	75	21	33	23	21	1.97
293242--293315	18	3.9	18	80	14	87	28	31	18	21	1.97
293258--293337	22	3.9	22	76	18	91	30	28	18	22	1.98
293242--293337	39	2.4	40	92	1	158	29	30	18	21	1.97
294307--294350	21	2.0	22	86	4	63	22	27	22	27	1.99
294866--294906	21	2.0	21	90	0	64	21	24	26	26	2.00
297683--297739	30	1.9	30	92	0	96	24	17	17	40	1.91
304804--304883	21	3.8	21	93	0	133	37	37	6	18	1.76
307491--307565	38	1.9	39	94	2	134	24	8	5	62	1.43
314685--314865	32	5.7	31	81	13	226	32	18	18	30	1.95
314665--314893	63	3.7	63	97	0	424	32	18	18	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314668--314918	31	8.0	31	77	12	253	31	18	19	30	1.96
314905--314975	30	2.4	30	85	0	88	21	22	25	30	1.98
317571--317618	24	2.0	25	91	4	80	56	4	20	18	1.58
319388--319432	23	2.0	23	86	8	65	44	6	13	35	1.70
319668--319848	32	5.8	32	79	13	214	32	18	18	30	1.95
319648--319900	31	8.1	31	78	12	266	31	18	19	30	1.95
319648--319876	63	3.7	63	95	0	406	32	17	18	31	1.94
319888--319959	30	2.4	30	85	0	90	20	22	26	30	1.98
329918--329950	16	1.9	18	88	11	52	48	6	0	45	1.27
330336--330411	37	2.1	37	85	7	102	40	9	10	39	1.72
347931--348023	21	4.5	21	78	4	100	39	18	24	17	1.91
347931--348023	41	2.3	41	100	0	186	39	18	24	17	1.91
347950--348084	41	3.3	40	82	4	128	37	21	21	20	1.95
348054--348105	20	2.6	20	93	0	86	26	28	19	25	1.98
348399--348423	13	1.9	13	100	0	50	12	0	0	88	0.53
348664--348709	20	2.4	19	85	7	65	47	26	15	10	1.78
348719--348806	33	2.6	33	92	1	140	11	25	25	38	1.89
348774--348831	20	2.9	20	80	10	64	13	24	18	43	1.87
350832--350954	42	2.9	42	80	2	122	22	36	17	22	1.95
350888--350954	21	3.2	21	66	6	55	23	35	20	19	1.95
352313--352348	14	2.6	14	95	0	63	30	0	25	44	1.54
352528--352678	19	8.7	19	64	21	80	15	22	20	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352532--352658	33	3.9	32	87	8	193	14	22	19	42	1.88
352525--352657	66	2.0	66	97	0	248	16	22	19	41	1.90
355147--355200	24	2.2	24	90	0	81	38	20	16	24	1.92
356235--356292	20	2.9	20	94	0	98	37	22	22	17	1.93
356311--356426	19	6.6	19	82	15	144	12	22	18	45	1.84
356311--356426	52	2.2	52	96	0	214	12	22	18	45	1.84
358398--358483	20	4.4	19	79	4	82	39	23	20	16	1.92
358490--358622	19	7.6	19	72	17	74	13	21	23	42	1.88
358495--358584	32	2.8	33	88	6	148	12	18	22	46	1.82
358569--358622	20	2.8	19	86	5	72	16	24	24	35	1.95
359088--359132	18	2.5	18	85	0	63	11	15	46	26	1.79
360669--360712	22	2.0	22	95	0	79	18	15	45	20	1.85
360901--360952	20	2.6	20	93	0	86	25	19	28	26	1.98
360881--360994	20	5.7	20	76	10	81	26	16	23	33	1.96
360920--360997	41	1.9	41	86	0	111	24	15	21	38	1.92
360920--361015	41	2.3	41	80	3	104	22	18	21	36	1.95
372018--372044	6	4.5	6	100	0	54	66	0	0	33	0.92
372869--372925	21	2.7	21	88	2	78	56	19	0	24	1.42
372966--373018	7	7.6	7	81	8	54	50	26	0	22	1.49
372966--373018	21	2.5	21	87	6	72	50	26	0	22	1.49
373290--373317	14	2.0	14	100	0	56	21	21	7	50	1.72
375843--375905	33	1.9	33	96	3	119	41	3	15	39	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377238--377312	32	2.3	33	83	4	89	41	6	4	48	1.48

Tables:   1   2

The End!