genome.fa.s9332.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009332.1 Hibiscus syriacus cultivar Beakdansim tig00113099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  474123

Tables:   1   2   3   

This is table  2  of  3  ( 265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222386--222415	15	2.0	15	93	0	51	26	20	30	23	1.98
222385--222505	36	3.4	35	85	4	161	36	14	23	25	1.93
222332--222689	87	4.0	87	83	5	437	35	14	23	26	1.93
222477--222562	21	4.4	20	72	19	83	38	12	25	23	1.90
222441--222562	57	2.1	57	90	3	192	38	13	23	24	1.90
222498--222579	36	2.3	36	89	0	119	36	12	26	24	1.91
222550--222594	15	3.0	15	86	0	63	28	8	31	31	1.88
222572--222667	36	2.7	36	87	6	140	35	14	26	23	1.93
222530--222630	51	2.0	51	90	3	159	34	12	25	26	1.92
222642--222682	15	2.7	15	96	0	73	31	19	31	17	1.95
223014--223094	34	2.4	34	89	0	117	35	11	19	33	1.87
223035--223102	34	2.0	34	97	0	127	36	8	19	35	1.83
223035--223116	34	2.5	33	88	7	105	37	7	18	36	1.79
223205--223340	33	4.2	32	88	2	182	32	24	14	28	1.95
223204--223340	65	2.1	65	87	2	195	32	24	14	28	1.94
229519--229557	17	2.3	18	86	8	55	61	5	5	28	1.39
229982--230056	2	37.5	2	100	0	150	50	0	0	49	1.00
233896--233947	23	2.3	23	80	6	72	17	21	40	21	1.91
241280--241536	72	3.5	69	83	6	271	27	15	15	41	1.87
241544--241584	21	2.0	21	90	0	64	31	14	9	43	1.78
241545--241591	21	2.2	21	84	0	58	29	19	10	40	1.85
241614--241818	102	2.0	102	91	0	311	32	18	12	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241663--241749	37	2.4	37	84	1	104	26	20	14	37	1.92
241619--241984	167	2.2	167	85	2	477	30	18	13	37	1.89
241700--241871	65	2.7	65	81	6	199	28	20	12	38	1.88
241779--242051	102	2.7	103	81	4	284	28	19	13	38	1.89
242078--242172	33	2.8	34	80	7	104	21	17	16	44	1.87
242114--242182	36	1.9	36	94	5	122	21	20	14	43	1.87
242200--242279	33	2.5	32	87	4	124	40	16	8	35	1.79
243645--243713	28	2.5	26	81	13	68	17	5	5	71	1.27
243642--243723	24	3.2	24	72	21	69	15	7	4	71	1.25
247692--247725	16	2.1	16	94	0	59	41	14	38	5	1.70
251881--251937	30	1.9	30	92	3	98	40	3	10	45	1.56
252830--252875	21	2.2	21	96	0	83	41	23	8	26	1.83
255150--255499	176	2.0	175	99	0	691	29	10	13	46	1.77
255663--255721	30	2.0	30	93	0	100	42	5	8	44	1.57
255662--255744	30	2.8	30	83	7	98	42	9	6	42	1.62
256599--256662	19	3.2	20	88	6	103	45	20	9	25	1.80
257633--257684	2	27.0	2	92	7	90	50	0	0	50	1.00
260126--260207	21	4.0	21	79	4	78	9	24	34	31	1.88
261962--261996	2	17.5	2	100	0	70	51	0	0	48	1.00
275692--275759	2	34.0	2	100	0	136	50	0	0	50	1.00
280971--281058	31	2.8	31	89	0	131	29	28	9	32	1.88
283046--283111	31	2.2	31	83	2	80	33	9	25	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283268--283364	31	3.1	31	86	0	131	31	27	9	30	1.88
285364--285433	31	2.3	31	87	0	95	34	8	22	34	1.85
286511--286893	6	63.8	6	100	0	766	16	16	16	50	1.79
287896--287930	6	6.0	6	86	6	54	82	2	0	14	0.77
287897--287930	17	2.0	17	94	0	59	82	2	0	14	0.79
293152--293210	26	2.3	26	96	0	109	28	30	15	25	1.96
295542--295602	10	6.1	10	86	9	81	9	11	1	77	1.07
295546--295611	21	3.2	21	83	10	84	10	12	1	75	1.11
296082--296111	14	2.1	14	100	0	60	33	23	13	30	1.93
304033--304161	30	4.4	30	78	2	120	18	13	6	62	1.51
304039--304152	60	1.9	58	83	3	147	18	13	5	63	1.48
308194--308224	13	2.4	13	94	0	53	16	19	48	16	1.81
308237--308291	10	5.6	10	85	10	78	34	29	21	14	1.93
308237--308292	19	2.9	19	87	10	78	33	28	21	16	1.95
312005--312133	36	3.6	35	83	5	150	30	20	12	37	1.89
311989--312133	36	4.0	35	80	6	146	32	20	12	35	1.90
312776--313092	130	2.4	131	77	7	302	26	30	15	26	1.96
314949--315086	30	4.6	31	76	10	135	21	13	5	60	1.54
317822--317884	27	2.3	27	86	0	90	36	23	20	19	1.95
321146--321188	3	14.3	3	80	9	52	32	2	2	62	1.20
321147--321194	22	2.2	22	81	7	53	35	2	2	60	1.20
321217--321264	25	1.9	25	95	0	87	45	41	0	12	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324399--324436	13	2.8	14	80	19	53	84	5	10	0	0.77
324391--324447	12	4.8	12	79	14	64	78	7	14	0	0.94
324405--324447	12	3.3	13	90	9	70	81	6	11	0	0.87
324391--324461	23	3.1	22	73	15	63	74	7	16	1	1.10
325666--325756	35	2.5	35	85	3	110	28	15	13	42	1.84
325888--326086	65	3.0	64	77	7	195	28	20	13	38	1.90
326034--326186	36	4.4	36	76	12	176	26	18	13	41	1.87
326080--326319	66	3.6	65	87	3	311	26	21	12	39	1.89
326938--326986	25	2.0	25	91	0	80	40	38	10	10	1.73
333983--334068	29	2.9	29	89	5	120	37	4	10	47	1.59
337561--337633	27	2.7	27	93	0	110	39	4	15	41	1.66
339784--340149	105	3.5	103	77	10	366	54	12	2	30	1.51
343026--343116	13	7.0	12	73	11	65	74	1	5	18	1.07
343033--343169	13	11.0	12	69	18	50	70	2	5	21	1.19
343026--343178	25	6.1	24	69	17	62	69	1	5	22	1.18
343625--343667	20	2.2	20	87	8	61	67	0	2	30	1.03
343697--343743	21	2.2	22	88	11	71	68	2	0	29	1.02
343848--343883	16	2.2	16	90	0	54	72	0	11	16	1.12
344354--344458	37	2.8	37	88	0	156	30	15	14	40	1.87
345188--346356	106	11.0	106	92	0	1779	22	17	25	34	1.96
346866--346902	18	2.0	19	94	5	67	43	32	5	18	1.73
347970--347994	13	1.9	13	100	0	50	0	12	8	80	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347971--348042	7	10.0	7	74	15	58	0	16	4	79	0.89
347970--348041	24	3.2	23	77	14	69	0	15	4	80	0.86
347983--348054	32	2.2	32	87	7	101	0	18	4	77	0.92
347997--348049	8	6.6	8	87	10	65	0	20	0	79	0.74
353304--353371	23	2.9	22	82	12	73	64	0	8	26	1.22
353919--354023	37	2.8	37	88	0	156	30	15	14	40	1.87
358153--358217	29	2.2	30	83	2	87	36	18	6	38	1.76
360227--360296	32	2.2	32	82	5	79	15	28	31	24	1.96
361283--361477	42	4.8	40	78	8	153	31	17	15	35	1.91
361282--361425	42	3.5	40	84	3	171	30	18	17	33	1.94
361282--361508	124	1.8	124	81	5	280	32	17	14	35	1.91
361282--361535	124	2.0	124	79	4	271	32	18	14	34	1.91
362004--362047	22	1.9	24	86	9	65	31	18	6	43	1.76
362532--362626	45	2.1	46	98	2	183	21	11	6	61	1.52
365635--365683	8	6.1	8	80	15	57	51	0	2	46	1.12
370397--370434	18	2.1	19	90	9	62	18	2	5	73	1.14
383202--383907	105	6.9	105	88	4	975	40	18	18	22	1.91
383202--383834	209	3.0	208	89	3	977	40	18	18	22	1.92
383653--383709	16	3.4	16	69	21	53	47	10	22	19	1.80
383746--383909	89	1.8	89	97	0	310	42	20	15	22	1.89
383222--383907	209	3.4	203	85	7	774	40	18	18	22	1.91
384032--384480	91	4.9	91	89	1	639	39	15	19	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414095--414129	17	2.1	16	89	5	52	37	8	22	31	1.85
414569--414850	45	6.2	45	87	2	334	40	9	17	32	1.82
414569--414850	90	3.1	90	86	1	386	40	9	17	32	1.82
414596--414895	90	3.3	90	84	5	340	40	9	17	33	1.80
414590--414909	135	2.4	135	83	3	385	40	8	17	33	1.80
417302--417327	13	2.0	13	100	0	52	53	0	0	46	1.00
422600--422637	9	4.2	9	90	9	60	28	0	0	71	0.87
422600--422634	10	3.6	10	96	3	63	28	0	0	71	0.86
422600--422637	19	2.1	18	95	5	67	28	0	0	71	0.87
423260--423313	21	2.6	20	82	5	54	35	3	9	51	1.52

Tables:   1   2   3