Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009332.1 Hibiscus syriacus cultivar Beakdansim tig00113099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  474123

Tables:   1   2   3   

This is table  3  of  3  ( 265 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
424832--424972
6
22.5
6
87
7
183
45
1
36
16
1.56
426687--426720
15
2.3
15
100
0
68
47
0
35
17
1.48
432015--432072
26
2.2
27
87
9
84
51
0
1
46
1.11
435948--435999
20
2.6
19
72
6
50
40
9
15
34
1.80
436410--436463
27
2.0
27
100
0
108
37
25
3
33
1.74
436417--436481
16
4.4
16
70
18
59
32
24
4
38
1.76
438577--438629
2
26.5
2
100
0
106
50
0
0
49
1.00
440143--440172
3
10.0
3
100
0
60
33
0
0
66
0.92
450617--450738
62
2.0
63
83
8
160
17
10
11
60
1.58
451172--451537
131
2.8
131
85
1
457
33
11
16
38
1.85
456895--457074
97
1.9
97
92
0
306
26
12
21
40
1.89
459873--459971
30
3.6
29
80
12
109
45
3
1
50
1.23
459873--459971
26
3.6
27
84
5
110
45
3
1
50
1.23
459961--460051
31
3.0
31
83
1
112
57
0
6
36
1.25
459974--460056
31
2.7
31
86
1
114
55
0
7
37
1.28
459974--460106
29
4.4
29
80
6
140
56
0
8
35
1.29
460673--460710
7
5.4
7
100
0
76
28
42
0
28
1.56
461462--461494
14
2.5
13
90
9
50
27
3
0
69
1.03
461500--461602
28
3.6
27
82
10
109
52
0
1
44
1.18
464449--464511
9
6.6
9
76
18
56
79
1
1
17
0.89
464543--464608
29
2.3
29
86
5
89
45
7
3
43
1.47
464572--464889
76
4.3
74
88
5
480
42
7
2
46
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
464572--464889
37
8.5
38
88
5
465
42
7
2
46
1.47
464572--464884
112
2.8
112
89
3
495
42
7
2
47
1.47
464572--464889
39
8.5
37
88
5
480
42
7
2
46
1.47

Tables:   1   2   3

The End!