genome.fa.s935.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000935.1 Hibiscus syriacus cultivar Beakdansim tig00001869_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  730910

Tables:   1   2   3   4   

This is table  2  of  4  ( 368 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265088--265124	4	9.2	4	93	0	65	24	2	24	48	1.64
265088--265131	12	3.7	12	93	0	61	22	4	27	45	1.72
265787--265853	33	2.0	33	88	0	98	28	8	13	49	1.72
274149--274204	25	2.3	23	84	6	67	25	8	8	57	1.58
274151--274204	23	2.2	25	83	6	67	25	9	9	55	1.61
285479--285508	2	15.5	2	93	6	53	50	0	0	50	1.00
288654--288685	11	2.8	12	90	9	57	62	0	0	37	0.95
291254--291288	15	2.3	15	100	0	70	28	34	22	14	1.93
291958--291995	20	1.9	20	94	0	67	26	34	28	10	1.90
298193--298227	15	2.3	15	90	0	61	28	31	22	17	1.96
300429--300477	26	1.9	25	84	12	64	46	2	2	48	1.25
301126--301200	23	3.3	23	77	1	71	50	14	22	12	1.76
301464--301626	87	1.9	87	93	0	281	42	12	12	32	1.80
301848--302325	200	2.4	199	83	4	588	31	14	13	40	1.85
304791--304838	19	2.5	19	96	0	87	52	10	6	31	1.60
306466--307058	199	3.0	198	90	1	934	30	15	14	39	1.87
308621--308645	11	2.3	11	100	0	50	48	8	8	36	1.62
310857--310899	15	2.7	15	85	10	50	27	11	34	25	1.91
311190--312224	200	5.2	200	90	1	1511	30	16	14	37	1.89
311190--312224	399	2.6	400	89	1	1533	30	16	14	37	1.89
312548--312596	19	2.6	19	96	0	89	55	10	2	32	1.45
314864--314919	24	2.4	24	79	5	71	50	7	0	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315316--315549	60	3.9	60	85	2	299	35	21	18	24	1.96
315319--315549	120	1.9	120	87	0	336	35	21	18	24	1.96
320522--320629	22	4.9	22	81	0	126	26	21	19	32	1.97
323539--323658	59	2.0	59	88	0	177	28	19	5	47	1.70
323726--323820	44	2.1	45	90	1	147	42	6	4	47	1.48
337021--337068	16	2.9	17	77	22	57	72	0	4	22	1.01
337738--337921	70	2.5	76	83	10	263	59	13	1	25	1.41
337773--337872	25	4.2	25	66	21	70	61	12	1	26	1.37
337718--337924	70	2.9	69	85	5	261	58	13	0	27	1.41
345230--345289	19	3.2	18	81	13	59	71	0	6	21	1.08
345950--346176	70	3.2	70	86	5	276	57	12	1	27	1.45
346569--346606	20	1.9	20	88	0	58	31	10	0	57	1.32
349763--349801	20	2.0	20	84	0	51	30	5	2	61	1.31
357129--357180	21	2.4	21	84	9	61	28	15	15	40	1.88
372613--372676	20	3.2	20	91	4	85	50	10	17	21	1.77
374823--374887	21	3.1	21	90	0	94	41	12	30	15	1.84
374921--374986	33	2.0	33	93	0	114	33	0	43	22	1.54
377067--378006	201	4.7	201	94	0	1623	36	14	17	31	1.90
377067--378006	401	2.3	402	94	0	1650	36	14	17	31	1.90
379417--379468	18	2.9	18	83	11	70	42	5	30	21	1.76
379417--379468	6	8.7	6	83	8	52	42	5	30	21	1.76
379417--379468	12	4.3	12	85	0	59	42	5	30	21	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381235--381283	20	2.5	20	80	12	64	46	6	12	34	1.66
383947--384104	73	2.2	73	83	10	191	32	17	22	28	1.96
384436--384563	64	2.0	64	87	3	186	33	11	10	43	1.76
384643--384669	13	2.1	13	100	0	54	55	22	7	14	1.64
386333--386432	2	56.0	2	73	21	71	56	0	0	44	0.99
386332--386423	9	10.8	8	74	17	53	57	0	0	42	0.98
386330--386431	18	6.1	17	73	21	90	57	0	0	42	0.98
386330--386413	33	2.5	34	98	1	161	59	0	0	40	0.97
388312--388430	57	2.1	56	83	7	143	30	23	20	26	1.98
388322--388430	56	1.9	56	85	5	148	29	23	20	26	1.99
394104--394188	24	3.5	24	98	0	161	21	25	22	30	1.98
396190--396308	57	2.1	56	84	7	152	31	22	18	26	1.97
396866--396915	12	4.3	12	77	10	59	18	46	24	12	1.82
396916--396982	29	2.3	29	84	0	80	25	7	25	41	1.81
396999--397097	29	3.5	28	80	5	101	34	4	23	38	1.74
396917--397075	86	1.8	87	83	1	212	30	5	23	41	1.75
397033--397127	29	3.3	29	82	4	102	31	5	20	43	1.74
398574--398612	14	2.8	14	84	0	51	35	0	17	46	1.49
398778--398864	20	4.3	20	76	5	95	18	21	24	35	1.95
399138--399189	20	2.5	21	87	3	70	21	23	17	38	1.93
399967--400020	24	2.2	24	90	0	81	22	16	20	40	1.91
402397--402581	91	2.0	90	91	6	300	47	18	12	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404269--404322	20	2.8	19	86	5	81	50	16	20	12	1.78
404269--404327	19	3.1	19	85	4	82	47	16	22	13	1.82
404323--404367	19	2.4	19	92	0	72	8	15	26	48	1.74
404910--404980	20	3.5	20	81	11	83	22	19	22	35	1.96
404988--405043	20	2.8	20	97	0	103	41	23	19	16	1.90
404970--405062	20	4.6	20	86	2	96	37	20	21	20	1.94
405051--405124	20	3.7	20	75	10	87	24	22	20	32	1.98
405037--405145	41	2.7	41	91	0	137	26	21	20	32	1.97
405075--405147	21	3.5	21	78	10	96	23	21	17	36	1.94
405487--405773	117	2.5	117	90	2	434	18	15	33	32	1.92
407612--407683	35	2.0	37	83	8	94	50	1	4	44	1.30
407829--407866	20	1.9	20	88	0	58	21	26	10	42	1.85
407907--408055	2	78.0	2	71	22	99	44	2	4	48	1.35
407907--408055	33	4.4	34	77	13	112	44	2	4	48	1.35
407936--408196	35	7.5	34	66	22	75	43	1	7	46	1.43
408085--408123	14	2.8	14	85	11	53	35	0	12	51	1.40
408183--408260	3	26.3	3	73	12	63	30	3	3	61	1.32
408185--408223	20	2.0	20	85	10	53	33	2	2	61	1.23
408167--408259	11	8.5	11	71	14	68	33	3	4	59	1.33
413150--413183	9	3.9	9	84	7	52	35	0	2	61	1.11
413149--413187	17	2.4	17	95	4	71	33	0	5	61	1.18
420542--420606	32	2.0	32	84	0	85	29	27	12	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422154--422248	48	2.0	48	95	0	172	41	13	14	30	1.85
429632--429666	2	18.0	2	94	5	63	51	0	0	48	1.00
432412--432441	13	2.2	14	94	5	53	43	6	13	36	1.70
439824--440094	88	3.1	88	94	0	445	28	23	19	28	1.98
439829--439960	42	3.0	42	65	23	110	30	23	18	27	1.98
440000--440417	127	3.3	128	76	4	362	26	26	18	27	1.98
440051--440534	127	3.7	126	75	9	401	26	27	18	27	1.98
440340--440594	135	1.9	134	80	2	296	27	26	18	28	1.98
441490--441524	2	18.0	2	94	5	63	51	0	0	48	1.00
445732--445827	49	2.0	49	87	0	138	39	12	22	25	1.89
449002--449059	3	19.3	3	89	7	91	68	0	31	0	0.89
454681--454718	20	1.9	20	88	0	58	23	15	18	42	1.89
465243--465366	45	2.8	45	93	1	214	29	23	6	40	1.79
465476--465590	61	1.9	61	89	3	178	30	29	18	21	1.97
469262--469314	20	2.7	20	85	11	74	3	16	0	79	0.88
469270--469312	19	2.3	18	84	11	59	4	13	0	81	0.84
471985--472108	45	2.8	45	93	1	214	29	23	6	40	1.79
472221--472339	61	2.0	61	88	3	177	29	30	18	21	1.97
473327--473388	30	2.0	31	90	3	99	35	25	6	32	1.82
480749--480790	20	2.1	20	86	0	57	54	11	9	23	1.66
482409--482441	15	2.1	16	88	5	50	24	6	0	69	1.10
482401--482450	17	2.9	18	77	16	54	22	6	0	72	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485348--485396	15	3.4	15	72	11	57	26	8	10	55	1.61
485344--485400	28	2.0	28	100	0	114	29	7	10	52	1.62
488107--488142	3	12.0	3	100	0	72	33	0	0	66	0.92
498106--498158	18	2.9	18	70	10	54	58	7	11	22	1.57
499634--499860	42	5.6	40	76	5	170	28	19	22	30	1.98
499848--500100	117	2.2	114	88	3	364	24	22	17	34	1.96
499962--500501	204	2.7	203	85	3	701	26	19	17	36	1.94
503352--503390	18	2.2	18	100	0	78	15	15	23	46	1.83
504030--504094	28	2.4	27	80	14	71	3	15	4	76	1.07
507784--507836	18	2.9	18	70	10	54	58	7	11	22	1.57

Tables:   1   2   3   4