genome.fa.s9395.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009395.1 Hibiscus syriacus cultivar Beakdansim tig00113298_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  477283

Tables:   1   2   

This is table  2  of  2  ( 152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395393--395444	26	2.0	26	84	0	68	42	15	15	26	1.87
395393--395435	13	3.3	13	80	0	50	41	11	18	27	1.85
395573--395995	81	5.2	81	88	1	544	36	11	20	31	1.88
397521--397847	163	2.0	163	89	2	496	22	27	14	34	1.94
404948--404986	20	2.0	20	94	0	69	48	2	23	25	1.63
405237--405267	16	1.9	16	100	0	62	19	12	25	41	1.87
412400--412437	18	2.1	18	100	0	76	52	5	26	15	1.64
417749--417855	54	1.9	54	84	5	142	31	16	6	44	1.73
426117--426171	22	2.6	23	86	11	73	29	16	27	27	1.97
426097--426171	20	3.8	20	77	19	77	29	14	32	24	1.95
426040--426261	94	2.4	95	86	1	304	33	14	26	25	1.95
426662--427095	135	3.2	135	90	0	679	39	11	17	31	1.85
426662--427095	45	9.6	45	88	0	607	39	11	17	31	1.85
428515--428555	10	4.1	10	83	0	55	29	0	2	68	1.03
428598--428630	14	2.3	15	90	10	52	21	3	9	66	1.33
428974--429002	14	2.1	14	93	6	51	37	20	6	34	1.80
430636--430687	21	2.6	21	90	6	81	32	13	7	46	1.72
431491--431921	180	2.4	178	77	8	424	41	10	10	38	1.74
432092--432344	140	1.8	140	90	1	409	36	7	8	48	1.61
432384--432450	21	3.1	21	76	14	64	46	2	4	46	1.38
433371--433410	18	2.3	18	86	4	55	35	2	20	42	1.65
435910--436006	42	2.3	42	78	5	97	28	5	22	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436637--436703	28	2.4	28	78	9	73	38	26	0	34	1.57
436638--436711	14	5.3	14	70	6	51	40	25	0	33	1.56
444931--444973	17	2.5	17	96	0	77	25	23	4	46	1.71
450493--451287	396	2.0	396	98	0	1554	38	21	8	31	1.83
456398--456557	45	3.6	45	89	2	234	39	8	23	29	1.83
465427--465472	22	2.1	22	95	0	83	43	23	17	15	1.87
473278--473707	45	9.6	44	87	2	547	30	17	11	40	1.85
473278--473707	135	3.2	135	90	1	657	30	17	11	40	1.85
475654--475708	20	2.6	22	80	11	62	36	12	29	21	1.91
476124--477187	54	19.9	54	88	2	1493	31	12	17	38	1.87

Tables:   1   2

The End!