genome.fa.s9397.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009397.1 Hibiscus syriacus cultivar Beakdansim tig00113302_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  510949

Tables:   1   2   3   4   

This is table  1  of  4  ( 367 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3595--3629	17	2.1	17	100	0	70	48	17	0	34	1.47
7151--7215	32	2.1	29	81	18	71	70	1	3	24	1.10
7203--7229	14	1.9	14	100	0	54	81	3	0	14	0.82
7292--7343	12	4.6	12	81	11	56	71	0	9	19	1.13
7292--7343	22	2.3	22	83	3	68	71	0	9	19	1.13
7384--7426	18	2.4	18	88	7	61	74	0	2	23	0.93
8514--9072	224	2.5	223	87	1	780	25	15	22	37	1.92
9037--9088	21	2.5	21	76	17	54	32	11	17	38	1.85
8979--9242	122	2.2	122	85	6	356	27	11	21	39	1.88
16773--16856	5	16.4	5	71	18	57	73	1	7	17	1.12
16803--16863	20	3.2	18	82	15	70	75	0	3	21	0.94
16811--16880	12	5.5	12	80	16	79	72	0	5	21	1.05
16803--16880	25	3.0	25	92	7	122	73	0	5	21	1.03
16906--16948	18	2.4	18	92	0	68	72	0	6	20	1.08
17432--17612	86	2.1	86	80	8	208	56	5	2	34	1.37
21497--21522	2	13.0	2	100	0	52	50	0	0	50	1.00
22456--22505	24	2.2	23	85	7	66	58	4	6	32	1.41
24343--24435	21	4.5	21	78	4	100	39	18	24	17	1.91
24343--24435	41	2.3	41	100	0	186	39	18	24	17	1.91
24362--24496	41	3.3	41	82	6	132	37	21	21	19	1.94
24424--24538	20	5.7	20	81	6	106	31	25	18	25	1.97
24421--24558	41	3.4	41	78	6	145	34	23	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25025--25062	20	1.9	20	88	0	58	13	15	21	50	1.78
26381--26425	18	2.5	18	88	0	72	26	44	15	13	1.83
26902--26968	20	3.4	20	85	2	82	40	23	20	14	1.90
27028--27062	11	3.0	12	83	8	54	11	17	28	42	1.83
27047--27117	19	3.8	19	86	1	99	15	21	23	39	1.91
28973--29007	14	2.5	14	85	0	52	31	0	20	48	1.50
30270--30323	24	2.2	24	90	0	81	24	16	20	38	1.92
30497--30521	12	2.1	12	100	0	50	72	0	28	0	0.86
32792--32917	33	3.8	33	84	6	184	42	19	22	15	1.88
32793--32924	65	2.0	66	94	1	230	41	18	21	17	1.90
33078--33114	14	2.6	14	91	0	65	45	24	0	29	1.53
34465--34531	21	3.2	21	68	4	55	19	20	35	23	1.95
34465--34587	42	2.9	41	79	7	113	22	18	36	21	1.95
36624--36660	14	2.6	14	91	0	56	43	21	21	13	1.87
36601--36693	47	2.0	48	84	2	125	39	23	22	13	1.90
36684--36773	19	4.7	19	93	2	153	46	22	20	11	1.81
36684--36773	39	2.3	38	94	1	153	46	22	20	11	1.81
37360--37412	20	2.7	20	93	0	88	26	20	28	24	1.99
37381--37475	41	2.3	41	80	3	102	21	20	23	35	1.96
41178--41238	31	2.0	31	93	6	106	36	9	26	27	1.88
47327--47364	6	6.3	6	100	0	76	0	15	50	34	1.45
47442--47481	20	2.0	20	90	0	62	12	17	17	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47474--47724	20	12.4	20	88	2	241	22	25	17	34	1.96
47475--47715	60	4.0	60	83	3	302	22	26	17	33	1.96
47759--47812	20	2.7	20	91	0	81	12	18	16	51	1.75
47799--47849	19	2.6	20	90	3	77	15	17	23	43	1.88
50453--50495	5	8.4	5	82	12	52	0	16	2	81	0.79
50451--50495	15	3.0	15	87	9	65	0	17	2	80	0.82
50451--50487	19	1.9	19	94	0	65	0	18	0	81	0.70
50942--51024	12	6.8	12	72	23	50	59	0	0	40	0.98
50948--51017	3	22.3	3	82	8	68	58	0	0	41	0.98
51845--51902	15	3.9	15	90	0	89	32	39	18	8	1.82
51924--51974	7	6.7	7	81	16	57	25	25	19	29	1.99
51924--51974	16	3.3	15	84	15	61	25	25	19	29	1.99
51924--51974	23	2.2	23	92	0	84	25	25	19	29	1.99
56232--56284	22	2.4	22	87	0	79	24	24	24	26	2.00
62227--62278	20	2.6	21	84	6	63	26	28	15	28	1.96
63769--63847	40	2.0	40	85	2	106	32	16	16	34	1.91
72791--72868	38	2.1	38	95	0	138	33	16	10	39	1.83
74778--74805	2	14.0	2	100	0	56	50	0	0	50	1.00
89715--89757	15	2.8	15	82	3	50	48	6	0	44	1.29
89756--89808	27	2.0	27	88	3	81	52	0	0	47	1.00
91415--91498	3	27.7	3	83	11	109	65	0	0	34	0.93
91640--91917	119	2.4	116	82	7	305	25	19	14	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91843--92367	113	4.7	113	87	7	773	30	19	12	37	1.89
91729--92396	228	2.9	227	84	7	849	29	19	13	37	1.90
93095--93311	114	1.9	114	89	0	335	30	20	15	34	1.93
93996--94088	10	9.4	9	81	16	89	2	13	0	83	0.73
93993--94107	31	3.8	29	84	11	142	2	15	0	81	0.79
94008--94107	21	5.1	18	79	14	85	3	15	0	82	0.80
93997--94096	28	3.4	28	84	12	130	2	15	0	83	0.75
93995--94052	1	58.0	1	75	0	53	0	12	0	87	0.53
105195--105247	27	2.0	27	88	3	81	52	0	0	47	1.00
106847--106927	3	26.7	3	85	12	112	65	0	0	34	0.93
106847--106927	19	4.4	18	86	11	112	65	0	0	34	0.93
109025--109149	62	2.0	63	90	1	198	29	9	24	36	1.87
110900--110961	29	2.1	29	88	5	90	19	48	22	9	1.78
111268--111351	29	2.9	28	89	7	123	25	29	29	15	1.96
111576--111606	15	2.1	15	93	0	53	64	6	22	6	1.40
111654--111691	9	4.2	9	83	10	51	31	0	2	65	1.06
111773--111825	28	1.9	27	88	3	79	32	1	16	49	1.57
111772--111836	27	2.3	29	82	10	82	36	1	15	46	1.55
114003--114050	14	3.6	14	78	16	66	45	16	0	37	1.48
114022--115156	60	21.3	49	76	17	583	46	11	0	41	1.42
114138--114334	49	3.9	43	85	13	124	47	12	0	40	1.41
114018--115160	109	10.1	109	83	11	1427	46	12	0	41	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114338--114374	10	3.7	10	85	0	56	40	18	0	40	1.51
114291--114422	69	1.9	69	98	0	255	44	13	0	41	1.44
114340--114378	20	2.0	20	95	5	71	41	20	0	38	1.53
114402--114450	24	2.0	24	84	7	64	44	14	0	40	1.45
114516--114600	10	8.4	10	71	16	50	47	14	0	38	1.44
114591--114684	21	4.6	21	65	23	65	48	9	1	40	1.43
114654--114790	49	2.9	43	97	0	148	47	11	0	40	1.40
114868--114961	21	4.6	20	66	20	61	47	11	0	40	1.40
114973--115158	59	3.2	59	88	7	288	46	12	0	40	1.41
114345--115196	169	5.1	166	82	9	941	46	12	0	40	1.44
118205--118258	28	1.9	28	96	0	99	57	12	0	29	1.36
118201--118265	28	2.3	28	84	10	96	55	10	0	33	1.35
118235--118283	21	2.3	21	85	3	71	53	16	0	30	1.43
118956--119039	29	2.9	29	81	0	96	13	23	39	23	1.90
122097--122157	24	2.5	26	77	17	69	55	0	0	44	0.99
122115--122154	19	2.1	19	85	0	53	55	0	0	45	0.99
122155--122208	12	4.6	12	79	4	65	24	48	14	12	1.79
123058--123128	30	2.4	29	77	11	81	40	8	14	36	1.76
125513--125650	36	3.9	36	95	0	242	24	15	16	42	1.88
125779--125851	36	2.0	36	97	0	137	26	16	15	42	1.87
125579--125981	201	2.0	200	96	0	743	26	18	17	37	1.93
131449--131509	31	2.0	31	87	9	90	32	6	26	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132916--133054	36	3.9	36	86	3	199	28	13	14	43	1.83
132916--133054	72	1.9	72	92	0	233	28	13	14	43	1.83
134317--134363	24	2.0	23	88	8	69	29	14	17	38	1.89
135329--135413	30	2.8	29	78	10	91	61	16	8	14	1.56
136365--136421	2	29.5	2	89	7	82	45	0	1	52	1.11
136419--136453	15	2.2	16	95	5	63	40	5	5	48	1.51
143578--143644	23	2.9	23	79	0	80	31	23	25	19	1.98
144114--144151	2	19.0	2	94	0	67	47	0	0	52	1.00
145640--145672	16	1.9	18	88	11	52	36	6	18	39	1.75
145640--145726	28	3.3	28	70	26	98	37	6	19	35	1.79

Tables:   1   2   3   4