genome.fa.s9432.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009432.1 Hibiscus syriacus cultivar Beakdansim tig00113421_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  327225

Tables:   1   2   

This is table  2  of  2  ( 205 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244580--244662	27	3.2	25	62	18	60	25	19	20	34	1.96
244526--244977	54	8.4	54	88	1	656	27	17	19	34	1.95
244533--245034	108	4.7	108	85	1	353	29	17	19	34	1.94
258069--258379	54	5.8	54	86	0	415	30	17	18	33	1.94
258069--258379	162	1.9	162	87	0	460	30	17	18	33	1.94
261557--261789	40	5.8	40	85	4	258	40	12	15	31	1.85
261628--261779	20	7.6	20	64	16	73	38	12	17	32	1.87
265067--265108	19	2.2	19	87	8	59	26	19	30	23	1.98
265654--265704	21	2.4	21	86	0	66	21	13	25	39	1.90
265698--265750	23	2.3	23	83	0	70	20	20	24	33	1.97
277574--277608	15	2.3	15	100	0	70	28	34	22	14	1.93
281513--281594	23	3.7	23	85	9	91	23	21	26	28	1.99
281470--281616	21	6.8	21	76	11	102	23	19	27	29	1.98
283296--283501	54	3.8	54	90	1	306	31	19	18	30	1.96
290272--290313	19	2.2	19	86	0	57	54	7	0	38	1.28
294445--294498	24	2.2	24	90	6	83	16	18	24	40	1.90
294457--294508	24	2.1	25	82	3	61	26	13	21	38	1.90
298711--299519	54	15.0	54	87	1	1086	32	16	17	33	1.93
298711--300036	162	8.4	162	77	10	1209	32	15	17	33	1.92
299482--299555	35	2.1	35	87	0	103	36	16	13	33	1.88
299435--299607	89	1.9	89	83	2	222	35	14	15	34	1.87
299517--299924	54	7.6	54	82	4	443	33	14	17	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299517--300032	104	5.0	105	79	7	424	33	14	18	34	1.91
299583--299921	158	2.1	160	86	3	468	32	14	18	35	1.91
299106--300036	412	2.3	411	83	6	1165	33	15	18	33	1.92
299843--300013	93	1.8	93	88	0	261	36	12	19	30	1.89
299923--300036	54	2.1	54	91	3	185	34	14	20	30	1.93
299936--300050	54	2.1	54	85	3	160	33	16	18	31	1.93
303483--303914	54	8.0	54	86	2	580	32	16	18	33	1.93
303481--304319	162	5.3	161	74	11	661	32	15	17	33	1.92
303877--303950	35	2.1	35	87	0	103	36	16	13	33	1.88
303830--304002	89	1.9	89	83	2	222	35	14	15	34	1.87
303919--304316	158	2.5	160	84	4	475	33	14	17	34	1.90
303912--304428	54	9.9	54	78	9	470	33	14	18	33	1.91
304238--304408	93	1.8	93	88	0	261	36	12	19	30	1.89
304331--304445	54	2.1	54	85	3	160	33	16	18	31	1.93
307879--308310	54	8.0	54	86	2	589	32	16	18	32	1.93
307877--308826	162	6.1	161	74	12	681	33	15	18	33	1.92
308273--308346	35	2.1	35	87	0	103	36	16	13	33	1.88
308226--308398	89	1.9	89	83	2	222	35	14	15	34	1.87
308315--308656	160	2.2	158	87	3	472	33	14	16	35	1.89
308308--308714	54	7.7	53	82	6	450	33	14	17	34	1.91
308315--308711	158	2.5	159	84	5	473	33	14	17	34	1.90
308633--308803	93	1.8	93	88	0	261	36	12	19	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308713--308826	54	2.1	54	91	3	185	34	14	20	30	1.93
308726--308840	54	2.1	54	85	3	160	33	16	18	31	1.93
312283--313090	54	15.0	54	87	2	1077	32	16	17	33	1.93
312283--313607	162	8.4	162	77	10	1191	32	15	17	33	1.92
313053--313126	35	2.1	35	87	0	103	36	16	13	33	1.88
313006--313178	89	1.9	89	83	2	222	35	14	15	34	1.87
313088--313495	54	7.6	54	82	4	443	33	14	17	34	1.90
313088--313603	104	5.0	105	78	7	415	33	14	17	34	1.90
313154--313492	158	2.1	160	86	3	468	32	14	18	35	1.91
313414--313584	93	1.8	93	87	0	252	37	12	18	30	1.89
313495--313607	54	2.1	54	90	3	174	35	15	18	30	1.92
313507--313621	54	2.1	54	83	3	151	34	16	17	31	1.92
317059--317865	54	15.0	54	87	2	1086	32	16	17	33	1.93
317059--318382	162	8.4	162	77	10	1209	32	15	17	33	1.92
317828--317901	35	2.1	35	87	0	103	36	16	13	33	1.88
317781--317953	89	1.9	89	83	2	222	35	14	15	34	1.87
317620--318114	250	2.0	249	83	4	622	33	14	16	34	1.90
317863--318270	54	7.6	54	82	4	443	33	14	17	34	1.90
317863--318378	104	5.0	105	79	7	424	33	14	18	34	1.91
317922--318267	158	2.2	160	85	3	473	32	13	18	35	1.90
318189--318359	93	1.8	93	88	0	261	36	12	19	30	1.89
318269--318382	54	2.1	54	91	3	185	34	14	20	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318282--318396	54	2.1	54	85	3	160	33	16	18	31	1.93
317454--318427	411	2.4	407	81	8	1118	33	15	17	33	1.92
321820--322625	54	15.0	54	87	2	1084	32	16	17	33	1.93
321820--322625	107	7.5	108	86	1	1084	32	16	17	33	1.93
321822--322625	161	5.0	162	85	2	1073	32	16	17	33	1.93
322588--322661	35	2.1	35	87	0	103	36	16	13	33	1.88
322541--322712	88	1.9	89	83	3	222	35	14	15	34	1.88
322381--322873	249	2.0	247	83	5	618	33	14	16	35	1.90
322623--323028	54	7.6	54	82	5	436	33	14	17	34	1.90
322623--323140	107	5.0	106	78	10	420	33	14	17	33	1.91
322688--323025	157	2.1	159	85	3	457	32	14	18	34	1.91
321950--323132	356	3.3	351	80	10	1015	32	15	17	33	1.91
322947--323117	93	1.8	93	89	0	270	37	12	18	30	1.89
323027--323140	54	2.1	54	91	3	185	34	14	20	30	1.93
323040--323154	54	2.1	54	85	3	160	33	16	18	31	1.93
326567--326994	54	8.0	54	83	4	537	32	17	17	32	1.93
326567--326994	105	4.0	107	84	6	503	32	17	17	32	1.93
326957--327029	34	2.1	35	84	2	94	36	16	13	32	1.88
326992--327224	54	4.4	52	76	13	181	35	15	14	35	1.88

Tables:   1   2

The End!