genome.fa.s9571.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009571.1 Hibiscus syriacus cultivar Beakdansim tig00116934_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  592744

Tables:   1   2   3   

This is table  2  of  3  ( 274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205666--205709	13	3.2	13	83	6	52	15	40	22	20	1.90
205644--205689	18	2.6	18	96	0	83	17	52	19	10	1.74
205684--205717	15	2.3	15	94	0	59	14	32	26	26	1.95
207013--207048	18	2.0	18	88	0	54	52	0	16	30	1.44
208178--208267	23	3.8	24	83	4	121	25	16	20	37	1.93
210463--210506	13	3.2	13	83	6	52	15	40	22	20	1.90
210441--210486	18	2.6	18	96	0	83	17	52	19	10	1.74
210481--210514	15	2.3	15	94	0	59	14	32	26	26	1.95
211809--211844	18	2.0	18	88	0	54	52	0	16	30	1.44
212978--213067	23	3.8	24	83	4	121	25	16	20	37	1.93
215259--215302	13	3.2	13	83	6	52	15	40	22	20	1.90
215237--215282	18	2.6	18	96	0	83	17	52	19	10	1.74
215277--215310	15	2.3	15	94	0	59	14	32	26	26	1.95
216602--216637	18	2.0	18	88	0	54	52	0	16	30	1.44
217768--217857	23	3.8	24	83	4	121	25	16	20	37	1.93
220002--220061	18	3.3	17	84	11	75	16	46	21	15	1.83
220024--220048	13	1.9	13	100	0	50	16	48	16	20	1.82
220041--220074	15	2.3	15	94	0	59	14	32	26	26	1.95
221353--221388	18	2.0	18	88	0	54	52	0	16	30	1.44
222511--222600	23	3.8	24	83	4	121	25	16	20	37	1.93
230277--230352	19	4.1	19	82	1	91	31	19	5	43	1.73
244863--244894	15	2.1	16	94	5	57	34	0	9	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247991--248035	2	23.0	2	95	4	83	48	0	0	51	1.00
248287--248315	2	15.0	2	92	7	51	48	0	0	51	1.00
258873--258942	34	2.1	34	97	0	131	42	14	8	34	1.76
268936--268997	32	1.9	32	90	0	97	43	11	4	40	1.62
270227--270264	16	2.5	15	87	12	51	44	0	0	55	0.99
270227--270264	15	2.5	15	83	16	51	44	0	0	55	0.99
270646--270687	17	2.5	17	88	7	59	57	7	2	33	1.39
273008--273062	19	2.8	20	88	8	85	36	16	30	16	1.91
273401--273607	63	3.3	62	83	8	204	30	22	17	28	1.97
279239--279319	24	3.6	22	77	14	85	24	25	20	28	1.99
279218--279341	44	2.8	42	78	8	131	28	27	19	25	1.99
281864--282070	63	3.3	61	83	9	202	30	23	17	27	1.97
291656--291758	52	2.0	50	96	3	188	35	15	29	19	1.93
304536--304702	60	2.8	60	80	8	171	43	5	17	33	1.72
304604--304727	60	2.1	60	82	0	149	42	4	20	31	1.73
305068--305106	20	2.0	20	84	0	51	28	23	0	48	1.51
307381--307453	25	3.0	24	68	24	62	26	6	4	63	1.38
330219--330251	16	2.1	16	94	0	57	33	27	6	33	1.81
334772--335093	83	3.9	84	84	7	414	41	5	9	42	1.62
341623--341648	2	13.0	2	100	0	52	50	0	0	50	1.00
343435--343463	2	14.5	2	100	0	58	48	0	0	51	1.00
347825--347881	29	2.0	29	89	0	87	57	12	12	17	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348903--348949	23	2.0	23	100	0	94	40	17	21	21	1.91
354040--354181	61	2.3	60	86	4	196	30	14	16	38	1.89
354409--354540	60	2.2	59	78	6	131	41	9	7	40	1.67
360619--360696	19	4.3	18	70	18	54	47	7	1	43	1.40
360619--360696	27	2.9	27	98	0	147	47	7	1	43	1.40
360918--360976	31	1.9	30	82	3	73	42	5	20	32	1.74
362998--363468	236	2.0	234	93	0	807	38	7	19	34	1.79
366363--366399	13	2.8	13	100	0	74	13	32	5	48	1.65
381614--381645	15	2.1	16	94	5	57	53	6	9	31	1.58
383110--383176	27	2.5	27	92	0	107	29	14	14	40	1.87
383614--383696	26	3.4	26	73	19	88	42	0	1	56	1.07
383615--383660	20	2.4	20	89	7	69	41	0	2	56	1.11
383649--383733	14	6.5	14	62	24	51	42	0	1	56	1.07
383768--383823	20	2.9	20	82	15	57	37	0	0	62	0.95
384047--384116	25	2.7	25	72	12	70	58	1	1	38	1.16
384423--384482	31	1.9	31	93	0	102	43	10	6	40	1.64
384604--384653	23	2.2	23	88	0	73	30	24	22	24	1.99
384698--384752	18	3.4	18	72	27	68	25	40	0	34	1.56
386019--386156	44	3.0	44	79	13	161	47	13	15	23	1.81
385997--386226	50	4.7	51	81	10	298	48	14	13	23	1.79
386323--386469	71	2.1	71	81	10	167	53	1	4	40	1.28
386633--386688	24	2.3	24	96	0	103	51	26	3	17	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392553--392627	25	2.9	25	84	7	80	41	4	1	53	1.28
392585--392661	27	3.0	26	83	9	86	37	2	0	59	1.11
392587--392675	31	3.0	29	79	14	94	41	2	0	56	1.12
396563--396649	35	2.5	34	80	12	97	55	10	8	26	1.61
398950--398990	18	2.3	18	87	4	57	60	2	7	29	1.36
403928--404025	51	1.9	51	87	0	142	41	11	25	21	1.86
407115--407179	31	2.2	30	81	10	71	29	6	4	60	1.41
407108--407181	31	2.4	29	72	14	69	32	5	4	58	1.40
407798--407836	10	3.7	10	89	6	51	82	0	17	0	0.68
411775--411799	12	2.1	12	100	0	50	12	0	24	64	1.27
420093--420120	13	2.2	13	100	0	56	25	25	14	35	1.93
420999--421042	20	2.2	21	80	12	56	25	13	34	27	1.93
421007--421051	20	2.2	20	96	0	81	15	17	33	33	1.92
423828--424042	56	3.8	57	76	6	179	50	13	3	32	1.58
423828--423938	55	2.0	56	89	7	172	50	15	3	30	1.61
423837--423994	57	2.8	56	84	4	176	51	15	2	29	1.57
423827--424018	28	6.8	28	81	7	156	49	14	3	33	1.58
438011--438061	18	2.9	18	91	2	77	35	7	29	27	1.85
438071--438126	27	2.1	27	96	3	105	26	7	30	35	1.83
442671--442720	26	1.9	26	87	0	73	58	2	8	32	1.39
447010--447118	46	2.3	46	87	3	146	28	22	22	25	1.99
450884--450925	20	2.2	19	86	4	57	14	26	0	59	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452922--453015	30	3.1	30	83	3	100	34	28	20	17	1.95
452976--453070	31	3.1	31	75	3	93	35	21	15	27	1.94
457957--457981	2	12.5	2	100	0	50	48	0	0	52	1.00
457979--458036	4	14.5	4	88	0	80	24	5	25	44	1.74
458833--458873	16	2.6	16	88	3	57	24	21	17	36	1.94
477306--477377	28	2.5	29	80	8	76	33	6	19	40	1.78
477720--477837	54	2.2	54	100	0	236	33	15	10	41	1.80
487273--487297	13	1.9	13	100	0	50	32	16	20	32	1.94
502754--502788	18	1.9	18	94	0	61	40	2	14	42	1.60
509421--509445	13	1.9	13	100	0	50	80	0	12	8	0.92
518482--518550	35	2.0	35	100	0	138	57	10	8	23	1.59
518557--518582	12	2.2	12	100	0	52	42	15	0	42	1.47
518550--518592	15	3.1	14	80	19	54	46	13	2	37	1.57
518816--519047	118	2.0	118	97	0	437	48	15	13	22	1.79
519082--519116	17	2.1	17	88	0	52	51	8	14	25	1.70
519423--519452	14	2.2	14	94	5	53	23	6	0	70	1.11
521520--521591	37	1.9	38	83	10	96	45	4	1	48	1.30
522457--522483	13	2.1	13	100	0	54	44	11	7	37	1.68
527488--527520	2	16.5	2	100	0	66	0	48	0	51	1.00
527520--527553	2	17.0	2	100	0	68	50	0	0	50	1.00
528204--528259	23	2.3	23	87	6	76	30	1	1	66	1.12
528192--528250	12	5.1	12	74	15	52	32	1	3	62	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
529133--529194	20	3.1	20	92	0	97	22	20	22	33	1.97
529136--529207	20	3.8	18	83	10	81	19	19	23	37	1.94
529697--529801	21	5.0	20	67	12	59	21	36	18	23	1.95
531367--531420	20	2.7	20	79	0	63	46	25	16	11	1.80
531414--531653	20	12.6	20	78	10	245	26	18	22	33	1.96
531447--531591	74	2.0	74	90	0	227	24	19	22	33	1.97
531431--531653	94	2.4	94	87	4	324	26	17	21	34	1.96
531628--531893	140	1.9	140	97	0	505	42	15	13	28	1.84
531953--531987	18	1.9	18	94	0	61	17	2	25	54	1.57
533552--533682	20	6.6	20	89	3	106	25	21	19	32	1.97

Tables:   1   2   3