genome.fa.s9571.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009571.1 Hibiscus syriacus cultivar Beakdansim tig00116934_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  592744

Tables:   1   2   3   

This is table  3  of  3  ( 274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533587--533682	40	2.4	40	84	6	149	25	20	16	37	1.93
535690--535757	24	2.7	25	69	28	63	26	5	2	64	1.30
541476--541600	51	2.5	50	84	6	155	19	30	33	16	1.94
543108--543184	37	2.1	36	83	9	93	49	1	3	45	1.28
543330--543367	20	1.9	20	88	0	58	26	26	5	42	1.76
543541--543577	19	1.9	19	100	0	74	18	0	32	48	1.49
551389--551661	125	2.2	125	86	3	361	28	18	18	34	1.95
551389--551708	84	3.8	82	83	4	354	29	18	17	34	1.94
551405--551701	125	2.4	123	85	2	342	29	19	16	33	1.94
551389--551702	41	7.5	41	84	2	358	29	18	17	34	1.94
551883--552018	41	3.3	40	83	8	125	40	22	11	25	1.88
561944--562056	43	2.7	41	81	9	120	34	19	15	30	1.92
562047--562156	43	2.6	43	82	0	121	37	24	11	26	1.90
582267--582359	21	4.6	20	78	4	96	38	18	24	18	1.92
582264--582359	41	2.3	41	98	0	183	39	17	23	18	1.92
582267--582359	20	4.6	20	78	4	96	38	18	24	18	1.92
582348--582441	20	4.7	20	77	2	80	35	24	17	23	1.95
582345--582422	41	1.9	41	83	0	102	41	21	15	21	1.90
582986--583030	19	2.4	19	92	0	72	48	26	15	8	1.74
583026--583210	19	10.1	19	75	14	165	12	22	21	43	1.86
583026--583111	39	2.2	38	91	2	136	12	20	20	45	1.84
583098--583185	33	2.6	33	92	1	140	11	25	25	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
583153--583210	20	2.9	20	80	10	64	13	24	18	43	1.87
585206--585328	42	2.9	42	80	2	122	22	36	17	22	1.95
585262--585328	21	3.2	21	66	6	55	23	35	20	19	1.95
586684--586719	14	2.6	14	95	0	63	30	0	25	44	1.54
586898--586981	19	4.7	19	78	14	106	13	23	19	44	1.85
586948--587001	19	2.8	19	85	2	63	18	20	20	40	1.91
589270--589303	11	3.1	11	100	0	68	0	29	0	70	0.87
590638--590710	14	4.5	15	74	22	60	13	20	19	46	1.83
590634--590700	18	3.8	19	83	16	92	13	22	17	46	1.83
590817--590853	14	2.6	14	86	0	56	48	21	0	29	1.50
591291--591326	17	2.1	17	100	0	72	16	22	16	44	1.86
591442--591478	14	2.6	14	86	0	56	48	21	0	29	1.50

Tables:   1   2   3

The End!