genome.fa.s9575.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009575.1 Hibiscus syriacus cultivar Beakdansim tig00116943_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  458240

Tables:   1   2   3   

This is table  3  of  3  ( 299 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329857--329886	2	15.0	2	92	0	51	50	3	0	46	1.18
330955--330998	18	2.3	20	81	14	58	56	11	0	31	1.35
332511--332851	135	2.5	134	81	3	407	24	16	31	26	1.96
332954--333075	36	3.4	36	68	8	113	42	13	17	27	1.86
333016--333144	65	2.0	65	90	0	204	43	12	19	24	1.85
332883--333143	137	1.9	137	85	9	361	44	13	17	24	1.84
335782--335829	10	4.7	10	86	2	60	0	12	4	83	0.79
335774--335829	20	2.7	19	84	13	67	0	14	3	82	0.81
335782--335845	16	4.1	16	76	11	51	0	15	4	79	0.89
335774--335845	30	2.4	30	81	6	83	0	16	4	79	0.89
335796--335850	27	2.1	25	83	6	65	0	14	5	80	0.89
337677--337724	3	16.3	3	86	4	71	66	2	2	29	1.14
338968--339014	2	23.5	2	100	0	94	51	0	0	48	1.00
341243--341272	11	2.8	11	95	5	53	40	3	0	56	1.16
345081--345114	17	1.9	18	94	5	61	47	0	0	52	1.00
346889--346956	29	2.3	29	87	0	91	42	23	5	27	1.77
347003--347027	13	1.9	13	100	0	50	12	24	48	16	1.79
354223--354296	29	2.6	29	82	0	76	41	22	6	28	1.79
354274--354382	29	3.8	29	97	0	200	44	19	11	24	1.83
354402--354449	13	3.7	13	100	0	96	12	22	47	16	1.80
354413--354468	18	3.4	18	69	23	50	14	21	46	17	1.84
357271--357306	14	2.6	14	86	4	56	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357788--357827	3	13.7	3	85	15	57	67	0	0	32	0.91
358190--358434	83	2.9	83	88	0	346	22	19	26	31	1.98
358441--358499	28	2.1	28	87	0	82	32	8	16	42	1.79
358506--358557	15	3.3	15	70	19	52	44	17	15	23	1.86
358599--358661	15	3.8	15	72	22	54	34	12	25	26	1.92
358614--358689	21	3.9	21	72	19	83	40	11	22	25	1.88
358597--358679	36	2.3	36	95	0	148	34	12	22	30	1.91
358614--358737	58	2.2	57	88	4	178	41	13	20	24	1.89
358768--358862	35	2.7	35	88	1	145	44	13	20	22	1.86
358768--358889	35	3.4	37	80	5	133	43	14	17	24	1.86
358761--358917	74	2.2	72	82	7	194	42	14	19	23	1.88
359258--359596	106	3.2	106	88	0	471	22	17	25	35	1.95
360246--360308	32	1.9	33	87	9	94	34	22	11	31	1.89
364247--364409	65	2.5	64	81	3	202	27	15	26	30	1.96
364357--364407	19	2.7	19	85	8	70	25	15	35	23	1.94
370340--370386	20	2.2	21	78	17	53	44	6	12	36	1.68
372484--372646	65	2.5	66	81	4	190	28	14	26	30	1.95
372594--372632	19	2.1	19	95	0	69	25	15	38	20	1.92
374680--374728	24	2.0	26	92	8	84	42	4	8	44	1.53
374746--374783	14	2.7	15	84	12	53	44	2	7	44	1.47
374725--374771	19	2.6	18	83	6	60	42	0	6	51	1.27
374680--374769	24	3.7	24	68	24	64	42	2	7	47	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376259--376304	17	2.7	17	86	6	58	23	2	0	73	0.94
377719--377993	37	7.5	38	89	7	357	45	2	4	46	1.39
379232--379256	13	1.9	13	100	0	50	8	0	4	88	0.64
389037--389162	59	2.1	61	81	7	143	45	10	7	36	1.68
393807--393856	24	2.1	24	92	7	84	50	22	12	16	1.77
394437--394528	32	2.9	31	93	1	148	36	19	18	25	1.94
394439--394528	31	2.8	32	93	1	146	37	20	17	24	1.93
402626--402657	2	16.0	2	100	0	64	50	0	0	50	1.00
414218--414253	18	2.0	18	100	0	72	27	22	5	44	1.75
419276--419374	30	3.4	28	75	21	96	39	3	9	48	1.50
420970--421046	35	2.2	36	79	9	86	50	16	16	15	1.78
424580--425215	230	2.8	228	89	4	948	40	19	17	22	1.91
428233--428306	28	2.7	27	87	6	105	44	1	9	44	1.44
428387--428475	2	45.5	2	86	8	103	42	1	3	52	1.25
455617--455844	5	45.8	5	92	0	269	42	5	16	35	1.72

Tables:   1   2   3

The End!