genome.fa.s9583.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009583.1 Hibiscus syriacus cultivar Beakdansim tig00116960_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1341443

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 696 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258795--258895	29	3.6	29	80	7	120	39	7	6	45	1.60
258836--258898	26	2.4	26	91	2	99	36	9	4	49	1.57
260682--260723	20	2.1	20	86	8	59	33	9	11	45	1.73
261783--261885	51	2.0	52	81	3	120	18	12	1	66	1.32
268203--268388	73	2.7	68	73	9	171	29	19	12	37	1.90
270667--270837	34	5.2	34	83	6	212	29	14	3	52	1.59
272896--272934	7	5.3	7	87	9	51	51	2	2	43	1.29
274501--274645	60	2.4	59	82	6	177	33	18	16	31	1.93
277973--278069	41	2.3	42	78	7	99	30	12	22	34	1.91
277991--278113	41	3.0	40	72	14	108	30	17	22	29	1.96
278012--278191	42	4.3	41	72	11	118	30	16	22	30	1.96
277995--278171	83	2.1	83	85	4	250	31	17	22	28	1.96
278036--278194	42	3.8	42	72	12	121	32	16	22	29	1.95
278124--278212	42	2.1	42	81	4	99	38	11	19	31	1.87
279652--279754	43	2.5	39	78	9	107	36	18	15	29	1.92
286796--287188	195	2.0	197	98	1	772	36	14	19	29	1.92
287985--288095	21	5.3	21	78	2	89	41	15	38	4	1.67
288061--288113	21	2.5	21	84	0	61	49	20	28	1	1.60
288561--288753	43	4.5	43	76	1	136	35	21	18	25	1.95
293725--293799	21	3.7	20	70	10	53	21	20	28	30	1.98
298586--298925	170	2.0	170	98	1	664	25	14	27	31	1.95
303796--303848	10	5.5	10	80	13	58	18	26	32	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303786--303855	19	3.7	19	92	3	106	20	25	30	24	1.99
303787--303855	9	7.3	9	77	9	66	18	26	30	24	1.98
303849--303889	17	2.4	17	95	0	73	17	41	24	17	1.89
303879--303928	7	7.4	7	86	8	77	16	28	30	26	1.96
303879--303924	13	3.5	13	90	3	74	15	28	30	26	1.96
303879--303928	20	2.5	20	90	6	75	16	28	30	26	1.96
308206--308773	283	2.0	284	88	3	840	37	17	16	28	1.91
312460--312555	28	3.4	28	100	0	192	55	3	9	32	1.48
312462--312581	56	2.1	56	89	1	177	59	2	10	28	1.43
319086--319125	17	2.2	19	86	8	57	62	5	30	2	1.29
319244--319297	17	3.2	17	89	0	81	20	16	9	53	1.70
319251--319334	35	2.4	34	82	5	89	23	13	8	54	1.65
321711--321735	11	2.3	11	100	0	50	60	0	24	16	1.36
328107--328158	10	5.0	10	77	9	50	21	30	30	17	1.96
328143--328180	16	2.3	16	90	4	58	31	34	18	15	1.92
329172--329218	25	1.9	24	83	12	60	55	0	4	40	1.19
329970--329996	13	2.1	13	100	0	54	22	7	7	62	1.46
338972--339002	4	7.8	4	100	0	62	22	0	0	77	0.77
339098--339167	31	2.3	30	79	16	72	21	8	5	64	1.43
342217--342250	17	1.9	18	94	5	61	38	11	2	47	1.55
342312--342341	10	3.0	10	90	0	51	56	13	0	30	1.37
347946--348186	66	3.6	65	83	7	281	27	19	16	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348212--348467	101	2.5	101	83	4	266	36	16	9	37	1.82
348137--348468	100	3.3	102	79	7	336	34	16	11	37	1.85
348823--349076	139	1.8	139	83	0	337	34	25	16	23	1.96
348823--349163	139	2.5	137	80	1	331	35	25	14	24	1.93
348874--349218	139	2.5	138	78	2	334	35	25	15	23	1.94
349291--349486	104	1.9	104	83	2	259	34	22	12	30	1.92
349393--349806	122	3.4	123	87	2	557	35	22	13	29	1.92
350699--351051	54	6.5	54	83	1	438	39	16	11	32	1.85
350699--351041	162	2.1	162	87	1	490	39	16	12	31	1.86
351370--351564	94	2.1	95	87	0	275	27	24	11	36	1.90
353609--353646	16	2.3	16	82	17	51	55	2	5	36	1.37
357557--357881	44	7.2	44	79	7	303	25	20	12	41	1.87
357600--357881	93	3.1	92	81	5	292	25	19	11	42	1.85
357557--357879	137	2.3	138	88	2	454	25	20	12	41	1.87
358859--358918	2	30.0	2	100	0	120	50	0	0	50	1.00
358944--358989	3	15.7	3	78	13	51	65	0	4	30	1.12
358935--358999	26	2.5	26	80	11	73	67	0	4	27	1.10
358944--358990	17	2.7	17	77	12	51	65	0	4	29	1.11
358942--358994	23	2.3	23	84	9	65	67	0	3	28	1.07
359572--359643	35	2.1	35	100	0	144	27	20	11	40	1.87
360082--360425	159	2.2	160	86	2	469	23	19	22	34	1.97
360502--360720	120	1.8	119	83	8	293	21	20	26	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365094--365143	21	2.4	21	100	0	100	36	8	38	18	1.80
369334--369395	29	2.2	28	82	8	72	72	0	4	22	1.03
369332--369394	26	2.4	27	78	7	76	71	0	4	23	1.05
369972--370043	35	2.1	35	97	0	135	27	20	9	41	1.84
376852--376919	21	3.2	21	93	0	109	23	26	19	30	1.98
376909--377055	20	7.3	20	89	3	215	37	20	20	21	1.95
376909--377076	60	2.8	59	80	13	191	36	20	20	22	1.95
377920--377973	24	2.2	24	93	0	90	20	18	20	40	1.91
380380--380468	20	4.4	20	88	2	135	34	24	22	17	1.96
380473--380560	19	4.8	19	74	16	96	48	15	19	15	1.81
380451--380560	52	2.1	53	86	1	150	47	16	20	15	1.83
380569--380664	33	2.9	34	85	3	131	14	23	19	41	1.89
380766--380802	14	2.6	14	86	0	56	48	21	0	29	1.50
382164--382266	42	2.5	42	75	3	109	23	19	35	21	1.96
382826--382919	34	2.8	33	80	3	107	42	23	19	14	1.88
382746--382941	20	10.4	20	78	14	168	38	21	19	19	1.93
382986--383149	20	8.5	20	80	8	187	20	18	18	41	1.91
382965--383149	40	4.9	40	76	11	187	19	19	18	42	1.90
382965--383146	54	3.3	54	77	8	202	19	19	18	42	1.90
385024--385093	20	3.5	20	86	0	86	42	24	15	17	1.88
385754--385845	20	4.6	20	74	24	95	22	20	22	33	1.97
385752--385927	60	2.9	60	93	1	280	25	20	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385774--385927	20	7.6	20	82	10	188	24	20	20	34	1.97
385974--386024	19	2.7	19	96	0	93	21	21	27	29	1.99
388417--388516	31	3.3	31	67	13	91	38	20	19	23	1.94
390347--390380	11	3.1	11	86	0	50	32	26	23	17	1.97
391632--391688	23	2.5	21	74	20	53	47	1	1	49	1.22
392754--392839	35	2.4	35	84	3	100	33	17	18	30	1.94
392778--392848	35	2.0	35	97	0	133	29	16	18	35	1.93
397486--397515	11	2.7	11	100	0	60	60	0	0	40	0.97
399528--399561	4	8.5	4	100	0	68	26	0	23	50	1.50
400551--400597	22	2.2	22	84	3	60	57	17	2	23	1.50
402291--402325	17	2.1	17	100	0	70	37	17	11	34	1.85
402614--402671	26	2.2	26	81	6	64	24	18	6	50	1.72
402688--402744	26	2.2	26	87	0	78	19	14	15	50	1.77
402711--402809	45	2.2	46	90	3	164	22	21	12	44	1.85
402731--402921	20	8.7	20	71	20	123	22	21	11	43	1.85
402661--402875	66	3.2	66	86	5	270	21	20	11	45	1.83
402797--402932	46	2.9	47	91	2	222	22	20	11	46	1.82
413075--413105	8	3.9	8	91	0	53	22	3	0	74	0.96
417008--417313	152	2.0	153	98	0	596	27	15	32	24	1.95
419547--419591	2	22.5	2	95	0	81	48	0	2	48	1.13
421431--421458	14	2.0	14	100	0	56	50	14	14	21	1.78
421724--421760	13	2.8	14	84	12	51	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423099--423133	14	2.6	13	86	8	52	48	0	11	40	1.39
423831--424092	16	17.1	15	68	22	104	38	1	4	55	1.30
423811--423960	5	29.8	5	75	20	136	36	1	3	58	1.23
423811--423995	14	13.3	15	73	22	131	37	1	4	56	1.28
423811--423953	19	7.7	19	76	19	124	36	1	3	58	1.24
423834--423960	35	3.6	35	82	17	156	37	0	3	59	1.19
423832--424001	35	5.0	35	75	22	114	38	0	4	56	1.25
423811--424003	16	12.9	15	76	17	129	37	1	4	56	1.27
425209--425255	19	2.5	19	83	10	60	8	4	29	57	1.48
426231--426301	15	4.7	15	78	0	70	33	2	16	46	1.62

Tables:   1   2   3   4   5   6