genome.fa.s9594.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009594.1 Hibiscus syriacus cultivar Beakdansim tig00116973_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  563256

Tables:   1   2   3   

This is table  2  of  3  ( 347 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240328--240371	14	3.0	15	80	6	63	40	6	20	31	1.79
240589--240656	30	2.3	31	80	12	79	41	0	0	58	0.98
240606--240672	30	2.3	30	85	12	86	46	0	2	50	1.16
240577--240743	87	1.9	86	82	8	205	45	0	3	50	1.19
240713--240775	23	2.7	23	85	5	72	47	0	1	50	1.10
240735--240775	12	3.4	12	81	18	50	46	0	0	53	1.00
240769--240904	27	5.0	28	69	20	85	51	1	0	46	1.15
240844--240931	31	2.8	32	81	13	103	48	0	1	50	1.08
240872--240927	14	3.7	15	77	13	62	57	0	0	42	0.99
240873--240916	22	2.0	23	86	4	63	54	0	0	45	0.99
241103--241222	42	2.9	42	86	5	170	50	16	13	19	1.77
242416--242485	10	6.4	11	73	18	65	55	2	1	40	1.23
247576--247624	20	2.3	21	93	6	82	34	10	16	38	1.82
250831--250884	22	2.5	22	78	0	63	38	22	9	29	1.85
256262--256303	22	1.9	22	85	0	57	38	21	9	30	1.85
256261--256309	22	2.2	22	77	0	53	42	20	8	28	1.80
257673--257764	40	2.4	37	78	12	94	21	20	22	34	1.96
257697--257763	21	3.3	21	75	10	77	20	20	25	32	1.97
257697--257779	40	2.1	41	88	8	127	20	20	22	36	1.95
259935--259984	26	1.9	26	100	0	100	28	28	14	30	1.95
260782--260852	34	2.2	32	84	5	88	22	30	15	30	1.95
261082--261123	21	2.0	21	95	0	75	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261268--261358	31	3.0	31	96	3	168	42	17	6	32	1.75
263718--263762	18	2.5	18	88	0	63	35	35	24	4	1.76
267191--267239	23	2.1	23	100	0	98	14	16	16	53	1.74
268859--268900	22	1.9	22	85	0	57	38	21	9	30	1.85
270319--270560	21	11.6	21	69	15	126	22	18	22	36	1.95
270325--270585	42	6.3	42	87	0	364	22	18	21	37	1.94
270386--270581	21	9.3	21	69	18	86	23	17	20	38	1.93
270523--270589	21	3.3	19	75	15	62	28	20	17	32	1.96
271310--271383	21	3.6	21	72	7	80	35	27	18	18	1.95
271294--271377	40	2.0	42	93	4	145	38	23	17	20	1.93
275480--275538	30	2.0	30	83	6	75	40	5	8	45	1.56
277690--278485	408	2.0	408	97	0	1511	33	19	20	26	1.96
286558--286603	8	6.4	7	90	9	51	52	0	0	47	1.00
286563--286604	2	21.5	2	95	4	77	50	0	0	50	1.00
286592--286642	20	2.5	20	81	15	68	41	5	13	39	1.69
286696--286777	2	40.5	2	71	24	57	42	4	2	50	1.37
286676--286775	9	10.8	9	69	28	52	41	5	2	52	1.35
286728--286772	20	2.3	19	88	11	65	40	8	0	51	1.33
286828--286866	4	10.0	4	83	5	53	46	23	2	28	1.65
288386--288423	20	1.9	20	94	0	67	31	18	23	26	1.97
289984--290050	23	2.9	23	81	0	80	22	25	20	31	1.98
291798--291850	20	2.7	20	96	0	97	20	26	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292691--292723	14	2.5	13	90	9	50	42	21	0	36	1.53
293693--293736	22	2.0	22	100	0	88	45	18	4	31	1.69
293877--293901	2	12.5	2	100	0	50	48	0	0	52	1.00
294314--294348	16	2.2	16	94	0	61	28	17	28	25	1.97
294635--294697	32	2.0	31	81	9	74	39	3	9	47	1.52
299613--299638	12	2.2	12	100	0	52	57	0	42	0	0.98
309774--309865	32	2.9	32	83	6	107	47	13	2	36	1.54
325843--325928	40	2.2	39	89	2	127	40	19	11	27	1.86
326157--326289	60	2.2	60	82	9	155	36	15	13	34	1.87
328161--328196	3	12.0	3	88	11	56	33	0	0	66	0.92
341876--341927	18	2.9	17	82	8	50	48	1	5	44	1.38
341900--341940	21	1.9	22	90	5	66	48	0	7	43	1.30
347495--347564	35	2.0	35	83	5	88	41	22	0	35	1.54
348081--348154	35	2.1	35	84	0	94	33	0	21	44	1.53
351787--351845	29	2.1	28	87	9	84	44	3	10	42	1.55
352145--352195	18	2.8	19	73	8	52	52	0	7	39	1.30
352416--352445	4	7.8	4	92	7	53	76	0	0	23	0.78
358831--358861	5	6.2	5	96	0	53	80	3	0	16	0.83
365958--365989	15	2.1	15	94	0	55	6	25	15	53	1.65
371049--371115	30	2.2	30	86	0	107	25	34	25	14	1.94
379896--379920	13	1.9	13	100	0	50	24	28	32	16	1.96
387112--387154	19	2.3	19	83	0	50	18	25	37	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397013--397064	14	4.0	14	76	19	58	9	9	25	55	1.62
397007--397083	24	3.2	24	88	3	102	12	10	20	55	1.66
397805--397871	16	4.3	16	92	3	102	10	10	19	59	1.58
397803--397863	32	1.9	32	96	0	113	8	13	22	55	1.64
397935--397965	16	1.9	16	100	0	62	6	12	22	58	1.58
398202--398248	23	2.0	23	91	0	76	38	8	12	40	1.74
399041--399083	16	2.8	16	92	3	70	60	6	6	25	1.48
399178--399220	22	2.0	22	95	0	77	51	11	0	37	1.39
399180--399228	22	2.2	22	85	3	62	55	12	0	32	1.37
399234--399621	22	16.2	24	67	21	124	53	14	0	32	1.41
399310--399379	21	3.1	21	74	18	77	52	17	0	30	1.44
399310--399917	47	12.7	46	68	20	190	52	13	0	33	1.41
399381--399434	14	3.6	14	72	18	54	57	5	0	37	1.22
399357--399731	32	12.7	32	68	24	202	52	12	0	34	1.40
399421--399828	22	21.1	20	66	26	142	51	12	0	35	1.40
399423--399536	22	5.0	22	87	6	174	50	13	0	36	1.42
399391--399985	126	4.8	123	72	18	462	52	12	0	34	1.40
399755--399858	32	3.6	32	73	26	131	52	13	0	33	1.40
399787--399828	21	2.0	22	95	4	77	52	14	0	33	1.42
399576--399858	54	5.3	54	84	5	256	52	12	0	34	1.40
399887--399961	31	2.4	32	95	2	134	54	9	0	36	1.33
399892--399947	18	3.4	18	69	23	59	55	12	0	32	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399679--399985	76	3.9	79	82	13	311	52	12	0	34	1.40
399990--400068	29	2.7	29	83	13	99	49	0	1	49	1.09
399679--400053	78	4.8	77	80	14	273	51	10	0	38	1.39
399983--400089	43	2.6	43	84	8	132	46	1	0	50	1.18
399941--400068	15	8.5	15	76	16	122	50	2	0	46	1.19
400627--400651	2	12.5	2	100	0	50	52	0	0	48	1.00
401142--401197	11	4.7	11	72	23	51	44	0	8	46	1.34
401100--401168	28	2.5	27	79	9	77	46	1	5	46	1.35
401114--401391	37	8.1	37	78	14	255	44	1	7	47	1.38
401153--401386	126	1.9	125	86	7	341	44	0	7	47	1.38
401223--401313	27	3.4	27	89	3	139	49	1	6	42	1.36
401287--401391	36	2.8	38	87	4	153	43	0	6	48	1.35
401353--401396	21	2.0	22	86	13	63	43	0	4	52	1.22
401353--401403	24	2.0	26	85	7	70	41	0	5	52	1.25
401290--401410	36	3.3	35	80	7	136	42	0	6	49	1.34
401395--401435	17	2.3	18	87	4	57	34	0	4	60	1.18
401386--401442	22	2.5	24	86	11	75	35	0	3	61	1.13
401390--401442	25	2.2	24	83	10	63	33	0	3	62	1.13
402660--402692	17	2.0	17	94	5	59	30	3	6	60	1.36
402727--402768	21	2.0	21	85	0	57	21	2	2	73	1.06
404347--404503	64	2.5	64	82	6	185	33	18	19	28	1.96
404472--404522	19	2.7	19	100	0	102	29	21	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404407--404587	83	2.2	83	81	8	208	34	20	19	25	1.96
405337--405658	103	3.1	103	98	0	626	25	12	24	37	1.91
405684--405737	23	2.3	23	90	0	81	20	27	24	27	1.99
409360--409580	64	3.5	64	81	4	250	33	19	18	27	1.96
410332--410653	103	3.1	103	97	0	617	25	12	24	37	1.90
410670--410732	23	2.7	23	90	0	90	19	26	26	26	1.99
412754--412826	24	3.0	24	89	0	110	47	12	9	30	1.73
424826--424854	9	3.2	9	100	0	58	34	0	10	55	1.34
424340--425332	501	2.0	501	99	0	1968	36	16	23	24	1.94
435041--435194	83	1.9	83	84	2	211	38	24	10	27	1.88

Tables:   1   2   3