genome.fa.s9594.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009594.1 Hibiscus syriacus cultivar Beakdansim tig00116973_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  563256

Tables:   1   2   3   

This is table  3  of  3  ( 347 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435711--435786	26	2.8	26	86	6	98	50	2	5	42	1.39
435775--435866	11	8.1	11	69	15	53	45	0	6	47	1.28
435749--435914	37	4.6	37	81	8	200	46	0	6	46	1.33
435703--435834	28	4.6	28	75	21	112	46	1	5	46	1.34
435749--435909	69	2.2	75	84	7	226	46	0	6	45	1.34
435901--435951	7	7.3	7	86	6	59	41	0	0	58	0.98
435902--435952	25	2.0	24	85	14	68	39	0	0	60	0.97
435902--435935	13	2.6	13	90	0	59	44	0	0	55	0.99
435901--435945	18	2.3	20	85	14	60	42	0	0	57	0.98
437166--437198	17	2.0	17	94	5	59	30	3	6	60	1.36
437234--437272	13	3.2	12	86	10	53	15	0	2	82	0.79
437292--437326	18	1.9	18	88	11	54	20	11	11	57	1.64
437920--438101	75	2.4	75	81	3	224	41	10	12	35	1.77
438089--438147	23	2.6	23	76	10	66	32	16	13	37	1.88
438002--438222	121	1.8	121	82	1	282	37	13	14	34	1.85
438136--438297	75	2.2	75	90	0	261	38	9	16	35	1.81
437939--438343	196	2.1	196	87	2	591	37	12	14	34	1.85
438272--438366	23	4.1	23	94	0	154	34	16	14	33	1.90
438395--438585	103	1.9	103	93	0	328	41	9	12	36	1.76
438601--438636	17	2.1	17	89	0	54	47	13	2	36	1.58
438907--439111	108	1.9	108	89	0	320	36	12	11	40	1.79
438980--439430	226	2.0	226	84	3	595	32	14	11	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440258--440332	21	3.6	21	92	0	123	41	0	18	40	1.51
441467--441529	31	2.0	31	100	0	126	41	9	14	34	1.78
442086--442139	20	2.7	20	97	0	99	31	12	5	50	1.64
442126--442197	32	2.3	30	83	4	90	47	11	2	38	1.54
444525--444642	38	3.0	40	89	6	154	8	0	40	50	1.39
452723--452773	26	2.0	26	85	14	70	45	17	0	37	1.49
453151--453207	29	2.0	29	85	0	78	33	22	8	35	1.85
453766--453926	43	3.8	42	85	3	187	24	16	25	34	1.95
453760--453926	86	1.9	86	83	0	217	26	15	24	33	1.95
454342--454408	21	3.2	21	86	0	89	0	34	20	44	1.52
456250--456713	232	2.0	232	99	0	919	34	22	10	32	1.88
463438--463482	17	2.7	17	82	3	56	82	2	6	8	0.93
464232--464325	41	2.3	41	81	9	111	26	26	15	30	1.96
464427--464799	191	2.0	190	84	1	496	32	17	17	31	1.94
467817--467869	20	2.7	20	93	0	97	35	22	15	26	1.93
467881--468016	63	2.2	63	78	7	143	25	20	20	33	1.97
470618--470647	2	15.0	2	100	0	60	50	0	0	50	1.00
471372--471412	17	2.4	17	95	0	73	14	19	4	60	1.51
472391--472522	63	2.1	63	80	2	140	23	16	20	39	1.92
473565--473616	24	2.2	23	90	6	86	13	23	17	46	1.83
473752--473785	17	2.0	17	100	0	68	35	23	29	11	1.90
475793--475834	21	2.0	21	90	0	66	21	23	7	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476001--476161	80	2.0	80	98	0	313	28	22	13	36	1.91
478475--478509	16	2.2	16	89	0	52	71	0	0	28	0.86
479702--480072	189	2.0	184	93	4	638	50	5	7	35	1.56
480363--480581	109	2.0	109	100	0	438	24	18	27	30	1.98
488452--488526	29	2.6	29	81	8	89	18	37	26	17	1.93
488482--488540	29	2.0	29	87	6	84	22	32	35	10	1.87
488755--488839	29	2.9	29	83	0	107	12	29	40	17	1.87
489092--489139	26	1.9	25	83	8	62	33	0	16	50	1.46
489403--489445	20	2.1	21	95	4	79	55	13	2	27	1.51
490905--490964	30	2.0	31	83	9	79	45	10	28	16	1.80
495322--495357	15	2.4	15	95	0	63	11	38	19	30	1.86
497122--497148	5	5.4	5	100	0	54	0	18	0	81	0.69
511914--512039	51	2.5	50	84	2	164	15	31	32	20	1.93
512149--512199	20	2.5	20	93	0	84	31	29	0	39	1.57
512221--512249	14	2.1	14	93	6	51	27	6	0	65	1.18
512332--512544	110	1.9	111	93	0	365	36	7	9	46	1.65
514362--514414	16	3.2	16	72	5	52	41	26	1	30	1.66
514742--514799	23	2.5	23	91	0	89	27	24	27	20	1.99
514742--514810	23	3.0	22	79	8	75	27	24	26	21	1.99
514826--515043	103	2.1	103	95	0	391	36	24	13	25	1.92
515797--515837	21	1.9	22	90	5	66	29	14	0	56	1.39
517301--517341	18	2.3	18	86	0	64	29	29	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517924--518002	38	2.1	38	81	9	90	32	8	6	51	1.58
521352--521467	51	2.3	51	89	1	171	18	32	34	14	1.91
522358--522411	27	2.0	27	82	13	67	38	5	3	51	1.43
523969--524265	43	6.8	43	72	9	192	53	6	14	26	1.63
523983--524228	86	2.8	86	75	7	221	50	6	15	26	1.69
526472--526915	225	2.0	225	93	4	761	45	7	7	39	1.62
526981--527026	20	2.3	19	89	10	74	54	10	17	17	1.70
527148--527198	20	2.7	18	83	16	68	52	9	17	19	1.72
529418--529482	21	3.1	21	80	6	69	40	15	29	15	1.88
529514--529579	33	2.0	33	90	0	105	28	0	48	22	1.51
531652--531723	23	3.2	23	88	2	92	34	5	19	40	1.75
532080--532142	22	2.8	23	85	4	83	34	6	20	38	1.78
532080--532156	23	3.5	22	81	13	86	33	5	19	41	1.74
532420--532469	25	2.0	25	88	3	75	34	8	20	38	1.82
532717--532753	18	2.1	18	89	0	56	32	5	10	51	1.60
532709--532755	24	2.0	24	86	0	67	34	4	14	46	1.64
533011--533136	39	3.2	39	97	0	234	48	20	13	17	1.81
533539--533602	23	2.8	23	87	0	92	35	6	20	37	1.78
533539--533611	23	3.2	23	82	7	85	34	5	20	39	1.76
537047--537102	28	2.0	28	100	0	112	17	17	39	25	1.92
542350--542418	6	11.7	6	81	3	77	33	0	63	2	1.09
542839--542864	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548197--548255	31	1.9	31	89	0	91	42	6	10	40	1.65
548280--548322	22	2.0	22	100	0	86	51	13	0	34	1.42
548282--548330	22	2.2	22	88	3	71	55	14	0	30	1.40
548270--548578	54	5.6	54	77	13	335	53	12	0	33	1.39
548382--548770	32	12.7	32	69	19	208	52	13	0	33	1.40
548302--548658	112	3.2	112	86	7	544	53	13	0	33	1.41
548419--548604	58	3.3	57	87	6	297	53	15	0	31	1.42
548506--548554	22	2.2	22	85	3	62	55	12	0	32	1.37
548589--548811	54	4.1	54	88	6	337	52	12	0	34	1.38
548640--548688	22	2.2	22	85	3	62	55	12	0	32	1.37
548611--548811	112	1.8	108	94	4	357	53	11	0	34	1.38
548748--548838	21	4.2	21	73	15	96	50	10	0	38	1.38
548795--548923	15	8.3	15	78	13	136	49	2	0	47	1.19
548740--548893	65	2.3	67	84	6	199	51	6	0	42	1.28
548834--548923	30	3.0	30	96	0	162	47	0	1	51	1.08
553926--553958	13	2.4	14	90	5	50	48	27	0	24	1.51
554145--554200	29	1.9	30	88	3	87	32	3	1	62	1.23
554525--554775	128	2.0	127	86	4	353	37	4	9	48	1.56
558371--558538	69	2.5	67	81	11	173	30	14	8	45	1.76

Tables:   1   2   3

The End!