genome.fa.s9595.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009595.1 Hibiscus syriacus cultivar Beakdansim tig00116974_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1046665

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
228790--228877	20	4.2	20	81	8	95	10	31	31	26	1.89
228790--228895	53	2.0	54	84	1	142	11	31	32	25	1.91
228824--228877	10	5.4	9	79	16	54	11	27	35	25	1.90
228942--229013	29	2.4	29	88	2	99	12	26	37	23	1.90
228958--229013	29	1.9	29	96	0	103	10	23	42	23	1.85
229376--229441	29	2.3	29	94	0	114	13	28	31	25	1.94
229376--229459	29	2.9	28	82	7	96	16	28	30	23	1.96
229757--229795	2	19.5	2	100	0	78	48	0	0	51	1.00
230008--230039	13	2.4	14	85	15	50	59	0	0	40	0.97
229994--230033	15	2.6	16	80	4	55	50	0	0	50	1.00
230256--230300	14	3.2	14	81	6	56	53	22	0	24	1.46
231076--231118	16	2.7	16	78	7	52	37	11	9	41	1.74
231055--231096	22	1.9	22	90	9	68	42	9	7	40	1.65
231141--231192	24	2.3	22	83	6	59	46	7	1	44	1.43
231184--231227	21	2.0	22	83	12	56	52	9	2	36	1.46
232176--232208	17	1.9	17	88	11	50	51	0	6	42	1.26
232211--232255	23	2.0	23	90	0	72	57	2	2	37	1.23
232217--232269	22	2.4	23	84	6	65	60	0	1	37	1.08
233274--233335	21	3.0	20	76	9	70	20	25	16	37	1.93
233346--233412	20	3.3	20	82	0	89	28	28	13	29	1.94
233605--233656	22	2.4	22	96	0	95	21	46	11	21	1.82
233796--234136	170	2.0	170	92	7	570	29	19	15	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234243--234299	25	2.3	24	77	14	62	21	8	17	52	1.71
235430--235477	18	2.7	18	93	0	87	27	45	12	14	1.81
236023--236078	20	2.8	20	81	2	69	39	21	23	16	1.92
236031--236114	19	4.6	19	74	15	70	41	22	22	13	1.88
236121--236186	19	3.7	19	75	19	79	12	19	21	46	1.82
236159--236225	20	3.4	20	83	2	82	14	20	23	40	1.90
236199--236251	20	2.7	20	84	0	61	26	13	26	33	1.93
236160--236241	40	2.1	39	81	6	94	17	17	24	41	1.89
236600--236667	21	3.3	20	74	8	66	25	39	16	19	1.91
236590--236679	40	2.2	42	86	4	130	22	40	15	22	1.91
238088--238126	14	2.8	14	84	0	51	35	0	17	46	1.49
238253--238306	14	3.5	14	73	22	54	50	20	18	11	1.77
238319--238408	40	2.4	36	82	13	112	15	18	21	44	1.87
238339--238406	20	3.4	20	72	8	75	16	20	23	39	1.91
238620--238669	20	2.5	20	80	0	73	22	18	22	38	1.94
239533--239586	24	2.2	24	90	0	81	22	16	20	40	1.91
239761--239787	12	2.2	12	100	0	54	74	0	25	0	0.83
241023--241103	21	3.9	21	66	6	65	23	20	32	23	1.98
241008--241116	42	2.6	41	82	5	112	22	19	33	24	1.97
241348--241532	91	2.0	90	88	6	273	48	17	12	21	1.81
243220--243406	14	10.8	19	68	23	126	45	20	22	11	1.83
243244--243406	33	4.9	33	95	0	263	44	21	23	10	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243220--243411	19	11.1	19	67	22	109	44	20	23	11	1.83
244025--244077	20	2.7	20	96	0	97	22	20	18	37	1.94
244074--244129	20	2.7	21	77	5	60	42	14	21	21	1.88
244067--244139	21	3.5	21	75	3	67	36	16	21	24	1.94
244004--244203	41	4.9	41	70	15	105	30	17	19	33	1.94
244047--244215	41	4.1	40	69	7	115	30	18	20	31	1.96
244193--244242	21	2.4	22	80	6	68	36	18	26	20	1.95
247561--247655	36	2.6	36	93	0	163	23	22	20	34	1.96
249002--249046	20	2.2	20	84	0	63	46	26	0	26	1.53
251336--251474	36	3.9	35	89	4	199	30	23	25	20	1.98
251336--251474	71	2.0	70	87	4	199	30	23	25	20	1.98
256213--256278	31	2.1	31	85	0	87	43	9	19	27	1.81
257136--257166	5	6.2	5	92	0	53	80	3	0	16	0.83
261119--261184	23	2.9	23	86	0	96	21	25	21	31	1.98
261277--261315	15	2.7	14	84	7	51	28	0	23	48	1.51
261946--262018	21	3.4	21	83	9	85	30	17	24	27	1.97
262061--262107	20	2.4	20	85	3	60	34	10	10	44	1.74
262692--262868	60	2.9	60	78	7	178	44	4	16	34	1.69
265800--265947	45	3.4	44	78	7	149	31	22	8	37	1.85
269175--269206	16	1.9	17	93	6	57	37	21	6	34	1.79
269661--269693	15	2.1	16	88	5	50	54	18	24	3	1.57
273653--273708	24	2.4	25	79	11	73	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278232--278302	35	2.0	35	97	0	133	18	19	18	43	1.88
282666--282705	20	1.9	21	90	10	64	52	25	5	17	1.64
283131--283249	64	1.9	62	89	3	184	41	13	15	30	1.85
292479--292557	15	5.2	15	76	14	81	53	0	2	44	1.14
301158--301185	2	14.0	2	100	0	56	50	0	0	50	1.00
301518--301562	8	5.9	8	79	10	58	51	2	0	46	1.13
301520--301569	15	3.3	15	82	0	73	54	2	0	44	1.11
303437--303466	15	2.0	15	100	0	60	6	40	6	46	1.56
303541--303572	2	16.0	2	100	0	64	50	0	0	50	1.00
307731--307787	22	2.6	22	91	0	87	36	22	15	24	1.94
308411--308482	35	2.0	35	83	2	90	22	22	19	36	1.95
308598--308630	18	1.9	18	88	11	52	27	30	0	42	1.56
308807--308840	18	1.9	18	88	5	52	23	35	0	41	1.55
309399--309437	2	19.5	2	100	0	78	48	0	0	51	1.00
309563--309602	21	1.9	22	85	10	57	62	0	7	30	1.23
311877--312050	60	2.9	60	80	10	196	34	22	4	38	1.75
326084--326119	13	2.8	13	100	0	72	61	22	8	8	1.51
326122--326171	24	2.1	24	85	7	66	58	18	14	10	1.63
326401--326438	14	2.7	14	91	0	67	57	13	13	15	1.65
347732--347766	18	1.9	18	88	11	54	28	22	5	42	1.76
350006--350070	33	2.0	33	85	11	91	35	13	4	46	1.64
350505--350567	21	3.0	20	77	22	60	28	31	12	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359230--359328	21	4.8	20	75	6	81	37	22	19	21	1.94
359296--359524	20	11.4	20	80	5	212	37	24	17	20	1.94
360223--360269	24	2.0	24	87	8	69	25	14	21	38	1.92
362749--362999	33	7.2	34	71	19	187	45	17	22	13	1.84
362763--362999	53	4.5	53	96	2	433	45	17	22	13	1.84
362763--363005	19	13.7	19	77	18	274	45	17	22	14	1.85
362749--362928	86	2.1	84	86	12	242	46	18	22	13	1.83
362763--362999	105	2.2	106	96	2	433	45	17	22	13	1.84
362995--363112	54	2.2	52	95	4	218	13	24	17	44	1.85
363014--363112	19	5.4	19	84	12	136	14	23	17	45	1.84
363219--363255	14	2.6	14	91	0	65	45	21	0	32	1.52
365178--365350	19	9.6	19	78	12	159	45	23	20	10	1.81
365272--365328	14	3.7	14	75	20	51	43	22	22	10	1.84
365253--365345	33	2.8	33	95	0	168	46	21	21	10	1.81
365212--365350	52	2.7	52	74	8	147	46	23	21	9	1.80
365350--365400	14	2.9	19	70	27	58	7	15	27	49	1.72
365346--365469	33	3.7	33	90	1	176	9	17	26	45	1.79
365346--365437	19	5.4	18	69	24	74	8	17	27	46	1.77
365395--365451	14	3.7	14	72	20	51	8	22	24	43	1.81
365567--365881	93	3.4	93	98	0	605	44	19	13	22	1.85
367548--367654	19	5.7	20	80	15	113	47	17	23	11	1.80
367546--367610	21	3.1	21	86	4	105	49	13	26	10	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367671--367727	14	3.7	14	75	20	60	8	24	22	43	1.81
367655--367734	33	2.4	33	95	0	142	8	21	22	47	1.78
367715--367788	21	3.5	21	80	7	96	14	20	17	47	1.83
367868--367938	33	2.2	33	94	0	124	47	16	23	11	1.79
368318--368510	20	9.6	20	83	5	228	19	19	26	34	1.96
370467--370525	10	5.8	10	76	11	66	71	3	1	23	1.11
370925--370991	36	1.9	34	82	11	82	44	0	0	55	0.99
371045--371102	10	5.6	10	82	8	62	20	6	3	68	1.27
371320--371405	40	2.2	39	83	8	104	46	1	0	52	1.08
370803--371588	395	2.0	392	92	3	1319	38	8	5	46	1.59

Tables:   1   2   3   4   5