genome.fa.s9595.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009595.1 Hibiscus syriacus cultivar Beakdansim tig00116974_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1046665

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870171--870229	28	2.1	27	81	6	64	76	3	5	15	1.10
875592--875619	13	2.2	13	100	0	56	78	7	7	7	1.09
875786--875854	30	2.2	30	82	15	86	37	5	15	40	1.72
875795--875854	29	2.0	31	90	6	97	36	6	15	41	1.73
876072--876113	21	2.0	21	86	9	59	26	21	23	28	1.99
876143--876182	20	1.9	21	85	10	55	37	37	10	15	1.80
876398--876467	34	2.1	32	86	5	95	31	15	30	22	1.95
878482--878557	23	3.3	23	85	5	102	28	22	14	34	1.93
878482--878557	11	6.7	11	73	5	71	28	22	14	34	1.93
880462--880553	31	3.0	31	93	3	150	19	19	22	38	1.94
882313--882365	14	3.8	14	79	0	61	26	0	20	52	1.46
882310--882365	21	2.7	21	77	0	58	25	0	25	50	1.50
882442--882488	7	6.9	7	85	9	53	29	0	25	44	1.54
882435--882488	27	2.0	27	92	0	90	33	0	24	42	1.55
882486--882517	14	2.1	16	88	11	50	31	12	12	43	1.80
887501--887872	191	1.9	191	83	3	480	40	19	14	25	1.89
898291--898326	15	2.4	15	100	0	72	19	22	5	52	1.66
903146--903176	2	15.5	2	100	0	62	48	0	0	51	1.00
907334--907380	24	2.0	24	83	8	60	29	23	25	21	1.99
907343--907435	23	4.0	24	81	10	72	36	24	21	17	1.94
907379--907434	23	2.4	23	90	0	94	42	26	16	14	1.86
909000--909032	16	2.1	16	100	0	66	24	12	36	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
911977--912019	21	2.0	21	86	8	61	34	18	23	23	1.96
914887--914942	29	1.9	30	85	3	78	35	19	5	39	1.75
922028--922052	10	2.5	10	100	0	50	52	8	0	40	1.31
922356--922417	29	2.1	31	84	6	83	38	19	4	37	1.73
925695--925758	27	2.3	28	94	2	112	51	0	18	29	1.47
927560--927600	2	20.5	2	84	0	55	43	0	2	53	1.13
928899--928929	16	1.9	16	93	0	53	51	3	16	29	1.59
940063--940374	155	2.0	156	98	0	608	40	13	12	33	1.82
940488--940533	23	2.0	23	95	4	85	4	41	4	50	1.42
940800--940859	26	2.2	28	94	5	106	46	3	11	38	1.57
942068--942190	50	2.4	50	79	4	131	14	32	29	23	1.94
951255--951608	113	3.1	113	91	2	595	31	12	12	43	1.80
951851--951900	23	2.2	23	88	0	73	32	16	12	40	1.84
951836--952033	82	2.3	85	88	6	303	33	13	10	42	1.77
952352--952744	112	3.5	112	91	1	617	33	11	12	43	1.78
952832--952968	64	2.1	64	89	0	202	32	8	13	44	1.75
956170--956204	18	1.9	18	100	0	70	22	17	34	25	1.96
958925--959044	21	5.5	23	80	10	103	29	19	27	24	1.98
958944--959044	44	2.3	44	83	10	118	29	18	26	24	1.98
962787--962826	21	1.9	21	85	10	55	35	7	2	55	1.42
962994--963029	18	2.0	18	100	0	72	27	33	16	22	1.95
970477--970570	49	1.9	49	93	0	161	40	14	12	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970826--970902	30	2.7	28	80	11	84	45	6	6	41	1.56
970833--970927	28	3.3	26	76	16	73	43	8	10	37	1.70
974800--974878	32	2.5	32	95	0	149	27	27	34	10	1.89
974865--974959	29	3.3	29	93	0	154	14	30	31	23	1.94
974986--975102	50	2.4	50	91	5	197	20	37	19	22	1.94
975313--975351	16	2.3	18	86	8	55	38	0	5	56	1.22
975456--975547	46	2.0	48	85	12	129	41	0	10	47	1.38
975586--975660	33	2.4	33	86	6	102	41	0	10	48	1.38
975705--975751	16	3.0	16	84	9	53	29	0	10	59	1.31
975726--975756	15	2.1	14	94	5	53	38	0	6	54	1.26
977902--977934	17	1.9	17	93	0	57	45	12	6	36	1.66
977929--977972	21	2.1	21	86	0	61	45	4	9	40	1.56
977939--977972	11	3.2	11	83	8	52	47	5	8	38	1.59
977901--977983	14	6.2	14	76	17	63	44	9	7	38	1.65
978087--978126	14	2.9	14	88	3	55	47	5	2	45	1.38
978069--978819	12	60.9	12	68	14	112	44	9	2	43	1.50
978085--978829	26	30.2	26	75	12	554	44	9	2	43	1.50
978085--978586	147	3.4	145	82	11	499	44	9	2	43	1.49
978105--978887	124	6.4	121	92	4	938	44	9	2	43	1.50
978246--978832	271	2.3	270	79	18	218	43	10	2	43	1.52
981715--981775	26	2.4	24	76	15	59	42	1	6	49	1.38
982565--982613	21	2.3	21	82	3	62	51	18	0	30	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983039--983106	35	1.9	35	93	0	118	25	16	30	27	1.96
983146--983170	12	2.1	12	100	0	50	24	60	0	16	1.36
983461--983574	29	3.9	29	96	2	203	17	28	38	15	1.91
992812--992859	16	2.9	16	75	3	51	70	10	12	6	1.32
993114--993384	133	2.0	137	96	2	505	45	17	13	23	1.84
1001586--1001633	9	5.1	9	75	9	51	45	0	4	50	1.21
1002291--1002365	8	9.0	8	75	13	62	77	4	1	17	0.99
1002279--1002368	23	3.8	23	72	17	76	75	4	1	18	1.03
1002278--1002380	13	8.3	13	73	17	60	73	4	2	18	1.13
1002693--1002728	19	1.9	18	88	5	54	72	2	2	22	1.11
1003730--1003780	2	25.5	2	95	0	93	49	0	1	49	1.12
1007177--1007235	22	2.7	22	77	15	68	44	6	1	47	1.39
1017770--1017867	41	2.4	41	91	0	151	55	2	2	40	1.23
1017770--1017884	41	2.8	40	83	7	133	53	2	1	41	1.25
1020418--1020456	2	19.5	2	100	0	78	48	0	0	51	1.00
1020419--1020473	14	3.9	14	90	4	51	43	3	0	52	1.18
1023654--1023692	19	2.1	19	100	0	78	46	15	10	28	1.78
1024310--1024565	101	2.5	101	96	0	458	29	10	17	42	1.83
1027477--1027537	3	20.0	3	89	3	95	63	0	1	34	1.04
1027710--1028132	134	3.2	131	83	5	513	28	17	21	31	1.97
1027772--1028190	134	3.1	133	81	8	340	29	17	21	32	1.96
1028455--1028868	230	1.8	230	83	4	557	35	16	16	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1034056--1034216	64	2.5	64	81	6	175	35	18	19	26	1.95
1034860--1034919	23	2.6	23	89	0	84	18	25	28	28	1.98

Tables:   1   2   3   4   5

The End!