genome.fa.s9596.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009596.1 Hibiscus syriacus cultivar Beakdansim tig00116975_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1846166

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 926 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192119--192156	5	7.4	5	88	5	58	36	26	36	0	1.57
192107--192156	26	1.9	26	92	8	84	36	30	34	0	1.58
192776--192833	20	2.8	21	82	12	59	32	17	22	27	1.96
192869--193218	21	16.9	21	79	5	293	25	21	20	32	1.97
192797--193224	83	5.3	81	89	5	516	25	20	21	32	1.97
192797--193152	62	5.9	62	79	13	268	25	21	21	32	1.98
192797--192851	21	2.6	21	85	0	74	27	20	23	29	1.99
209635--209661	3	9.0	3	100	0	54	33	33	0	33	1.58
213716--213765	14	3.4	15	81	10	59	68	2	0	30	1.01
213716--213752	15	2.6	14	86	4	56	70	0	0	29	0.88
220157--220352	97	2.0	97	100	0	392	36	10	15	38	1.81
225772--225799	12	2.3	12	100	0	56	60	0	14	25	1.34
229926--229976	22	2.3	23	80	9	63	17	13	7	60	1.56
231336--231425	26	3.4	25	73	20	76	77	2	17	2	0.97
231330--231433	43	2.4	44	82	9	135	77	3	16	1	1.00
231338--231447	6	18.5	6	67	22	63	78	1	16	3	0.98
231350--231430	31	2.6	31	83	9	94	77	2	17	2	0.98
231336--231447	31	3.8	29	76	15	86	78	1	16	3	0.97
231308--231447	54	2.5	55	71	22	130	77	2	15	5	1.06
233367--233539	54	3.2	53	82	2	193	26	9	17	46	1.79
234272--234904	139	4.6	139	87	4	920	35	18	21	24	1.96
234272--234904	276	2.3	276	89	3	936	35	18	21	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234823--235382	240	2.4	239	89	4	818	33	18	22	25	1.97
238655--238694	19	2.0	21	90	9	66	35	0	0	65	0.93
240999--241047	2	24.5	2	100	0	98	51	0	0	48	1.00
241415--241490	37	2.1	37	82	9	93	46	3	1	48	1.29
248536--248653	15	7.5	15	81	13	139	45	0	2	51	1.14
248656--248698	22	2.0	22	95	0	77	37	0	11	51	1.39
248633--248762	32	4.4	31	77	20	161	36	0	9	53	1.33
248551--248765	69	3.2	67	79	11	237	41	0	6	51	1.29
248633--248874	54	4.4	54	74	10	256	35	0	11	53	1.37
248687--248739	14	3.5	14	72	18	52	37	0	3	58	1.16
248733--248806	22	3.2	23	76	14	71	28	0	17	54	1.44
248822--248864	22	2.0	22	95	0	77	37	0	11	51	1.39
248889--248947	31	1.9	31	89	0	91	44	10	5	40	1.60
251277--251388	50	2.2	49	81	4	125	17	33	26	22	1.96
251523--251557	10	3.5	10	85	14	54	34	25	0	40	1.56
251687--251908	111	2.0	111	94	0	390	36	7	10	45	1.68
253414--253469	18	3.1	18	89	0	85	26	28	21	23	1.99
265499--265551	2	29.5	2	77	21	55	52	0	0	47	1.00
267910--267960	3	17.0	3	100	0	102	66	0	0	33	0.92
289588--289787	63	3.3	61	84	6	196	34	16	14	35	1.89
289624--289787	63	2.7	63	88	3	237	34	17	13	35	1.88
289997--290121	60	2.1	60	86	3	171	37	20	12	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292994--293021	2	14.0	2	100	0	56	50	0	0	50	1.00
302102--302139	2	19.0	2	100	0	76	50	0	0	50	1.00
310826--310862	2	18.5	2	100	0	74	48	0	0	51	1.00
311936--311999	26	2.5	26	90	10	96	46	7	3	42	1.48
318614--318651	17	2.4	16	84	16	53	5	10	2	81	0.94
329337--329395	27	2.2	28	82	11	79	54	3	3	38	1.34
330808--330873	31	2.1	31	94	2	114	50	4	1	43	1.32
334908--335119	115	1.8	115	88	2	327	47	16	3	32	1.63
334902--335120	29	7.6	29	88	3	289	47	16	3	32	1.65
339345--339389	21	2.1	21	87	0	63	31	28	24	15	1.96
340725--340825	31	3.2	32	77	12	111	30	18	16	33	1.94
340813--340906	30	3.1	30	90	3	136	20	21	27	30	1.98
346437--346608	29	6.0	29	89	6	246	47	16	2	33	1.60
351005--351071	33	2.0	33	100	0	134	32	11	17	37	1.87
354516--354604	45	1.9	47	90	4	146	28	10	23	38	1.87
354516--354631	45	2.5	45	84	9	135	31	10	24	34	1.89
361602--361632	1	31.0	1	93	0	53	96	0	3	0	0.21
364190--364316	23	5.2	25	68	24	58	72	0	20	6	1.11
364199--364251	19	2.7	18	77	11	52	73	1	18	5	1.12
364208--364301	16	5.8	16	70	24	56	72	1	20	6	1.13
364258--364308	22	2.3	23	86	10	70	70	0	21	7	1.12
364209--364321	15	7.7	14	74	20	65	72	0	19	7	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364243--364316	16	4.6	17	77	14	68	74	0	20	5	1.01
365587--365669	37	2.2	37	91	4	132	42	18	19	20	1.90
365672--366273	55	11.1	55	91	3	707	27	15	24	31	1.96
366021--366337	55	6.0	51	82	8	339	29	17	24	28	1.98
368977--369003	4	6.8	4	100	0	54	51	0	22	25	1.48
372433--372589	20	7.8	20	71	6	84	38	25	16	19	1.92
372576--372749	20	8.6	20	81	5	199	34	25	20	20	1.96
372433--372608	61	2.9	61	77	6	180	39	25	16	18	1.91
372576--372749	60	2.9	60	85	0	240	34	25	20	20	1.96
373133--373203	33	2.2	33	94	0	124	11	23	16	47	1.79
373283--373357	20	3.8	20	80	5	89	42	20	24	13	1.87
373341--373397	14	3.7	14	75	20	60	43	22	24	8	1.81
373295--373413	33	3.4	33	88	6	157	44	22	22	10	1.82
373295--373383	19	4.9	19	73	15	80	43	21	23	11	1.84
373431--373487	14	3.7	14	75	20	60	8	24	22	43	1.81
373414--373534	33	3.5	33	88	6	161	11	23	19	45	1.83
373409--373534	19	7.1	19	68	18	83	11	23	19	44	1.84
375230--375698	93	5.1	93	99	0	913	21	12	18	46	1.83
375746--375855	19	6.3	19	72	20	78	47	23	18	10	1.80
375764--375855	33	2.8	33	88	0	139	47	22	19	9	1.78
375783--375839	14	3.7	14	72	20	51	47	21	21	10	1.80
375851--375985	19	7.6	19	75	16	128	11	19	23	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375873--375929	14	3.7	14	77	20	60	10	21	22	45	1.82
375856--375948	33	2.8	33	95	0	168	10	20	21	47	1.80
377910--377945	14	2.6	14	95	0	63	33	0	22	44	1.53
378051--378152	19	5.6	19	84	13	151	44	16	23	15	1.86
378051--378150	52	1.9	53	97	2	193	45	16	23	16	1.85
378159--378481	33	9.4	33	82	12	323	13	21	18	46	1.84
378181--378457	19	15.7	19	82	15	364	14	22	17	46	1.83
378181--378457	52	5.2	52	92	6	459	14	22	17	46	1.83
380764--380788	12	2.1	12	100	0	50	0	28	0	72	0.86
380962--381008	24	2.0	24	87	8	69	38	21	14	25	1.92
381689--381898	20	10.5	20	85	2	215	20	17	25	37	1.94
381865--381962	20	4.8	20	77	3	79	21	18	23	36	1.95
381865--382021	41	3.9	41	70	14	110	18	17	25	38	1.93
384037--384134	20	4.9	20	83	5	108	30	22	19	27	1.98
384306--384349	22	2.0	22	90	0	70	22	38	15	22	1.92
384730--384817	20	4.4	20	78	1	70	15	12	22	48	1.79
386486--386534	17	2.8	18	96	3	91	32	18	6	42	1.75
386681--386768	20	4.4	20	89	0	122	37	22	19	20	1.94
387316--387420	21	5.0	21	72	3	86	21	37	18	22	1.94
387341--387423	42	2.0	42	83	4	105	21	38	19	20	1.93
388821--388872	14	3.6	14	74	7	50	38	0	15	46	1.46
388971--389024	20	2.7	20	85	0	72	44	25	18	11	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389067--389325	20	13.9	20	69	15	160	27	18	20	33	1.96
389127--389297	34	4.9	33	74	14	155	25	17	22	34	1.96
389089--389263	74	2.4	74	82	5	228	26	18	21	33	1.97
389027--389227	94	2.1	94	87	1	287	26	20	20	32	1.97
389089--389325	34	6.4	39	72	18	152	27	18	20	33	1.96
389108--389317	54	3.9	53	70	11	158	26	18	21	33	1.96
389296--389565	140	1.9	140	94	0	477	42	16	12	28	1.84
389625--389659	18	1.9	18	94	0	61	17	2	25	54	1.57
391908--391961	24	2.2	24	93	0	90	40	20	18	20	1.91
392775--392845	20	3.5	20	81	7	81	25	21	22	30	1.98

Tables:   1   2   3   4   5   6   7   8