genome.fa.s9596.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009596.1 Hibiscus syriacus cultivar Beakdansim tig00116975_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1846166

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 926 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1773565--1773608	13	3.4	13	87	0	61	34	15	20	29	1.94
1774071--1774117	25	1.9	24	82	4	58	29	8	2	59	1.39
1774485--1774764	106	2.6	106	84	5	325	39	12	12	34	1.82
1775403--1775474	23	3.1	23	79	0	90	34	16	15	33	1.90
1775524--1775595	23	3.1	23	84	7	85	33	16	15	34	1.90
1775636--1775706	23	3.2	21	84	7	63	33	12	21	32	1.91
1775645--1775716	23	3.1	23	87	0	99	34	15	15	34	1.89
1775691--1775948	75	3.4	75	91	0	390	32	15	13	39	1.85
1775354--1775781	121	3.5	121	87	1	624	34	14	13	37	1.85
1777091--1777166	32	2.3	32	86	6	109	25	48	13	13	1.78
1777143--1777231	29	3.1	29	85	3	108	21	39	22	16	1.92
1777245--1777284	19	2.1	19	100	0	80	0	57	17	25	1.40
1777466--1777531	26	2.4	29	85	10	93	53	6	33	7	1.54
1777672--1777712	22	1.9	21	85	5	55	26	0	19	53	1.45
1777894--1777968	30	2.4	30	84	10	89	42	0	10	46	1.38
1778013--1778059	16	3.0	16	84	9	53	29	0	10	59	1.31
1778034--1778064	15	2.1	14	94	5	53	38	0	6	54	1.26
1780275--1780322	14	3.6	14	81	16	66	47	16	0	35	1.47
1780294--1780405	48	2.3	49	92	3	181	48	10	0	41	1.38
1780343--1781454	120	9.6	120	80	11	1248	45	12	1	40	1.52
1780567--1780613	24	1.9	25	91	4	78	40	17	0	42	1.49
1780343--1780596	60	4.2	60	94	0	447	46	12	0	40	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1780669--1780717	25	2.0	25	95	0	89	46	14	0	38	1.44
1780670--1780718	14	3.7	14	81	15	68	48	14	0	36	1.44
1780685--1781122	60	7.3	60	94	0	788	46	12	0	41	1.41
1780739--1780765	10	2.7	10	100	0	54	40	18	0	40	1.51
1780193--1781002	406	2.0	395	95	2	1449	44	12	2	40	1.55
1780918--1781005	10	8.7	10	73	22	51	47	11	0	40	1.39
1780894--1780986	18	4.8	18	66	14	51	48	8	0	43	1.33
1781196--1781243	14	3.6	14	81	16	66	47	16	0	35	1.47
1781195--1781297	25	4.2	24	72	21	88	47	13	0	38	1.43
1781215--1781330	49	2.3	49	95	1	205	46	12	0	41	1.41
1781265--1781454	60	3.2	60	95	0	337	45	13	0	40	1.48
1781314--1781454	21	7.0	21	63	23	61	45	14	0	39	1.50
1780290--1781454	526	2.3	520	94	3	2038	45	12	1	40	1.52
1784909--1784970	28	2.1	30	94	5	110	56	12	0	30	1.37
1785370--1785413	23	2.0	23	95	4	81	31	27	18	22	1.97
1785493--1785576	29	2.9	29	96	0	150	16	21	39	22	1.92
1785564--1785635	33	2.2	33	94	0	126	9	15	47	27	1.77
1790416--1790485	33	2.1	33	86	0	95	25	28	15	30	1.96
1790931--1791010	22	3.6	21	80	9	88	28	13	23	33	1.93
1790931--1791018	45	2.0	44	90	2	140	27	15	23	32	1.95
1792941--1792978	17	2.2	17	90	0	58	10	26	0	63	1.27
1792938--1792987	17	2.7	20	70	20	54	12	28	0	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1794493--1794554	22	2.8	22	90	0	97	22	17	29	30	1.97
1795322--1795749	120	3.6	121	83	1	556	33	14	12	39	1.84
1795611--1795682	23	3.1	23	91	0	117	31	13	18	36	1.90
1795657--1795914	75	3.4	75	89	1	383	32	14	12	40	1.84
1798723--1798763	16	2.5	17	92	8	75	58	31	0	9	1.31
1799755--1799798	16	2.6	17	78	7	54	29	6	20	43	1.78
1801740--1801824	34	2.5	34	96	1	154	49	2	3	44	1.32
1802656--1802686	2	15.5	2	100	0	62	51	0	0	48	1.00
1806520--1806564	21	2.1	21	87	0	63	31	28	24	15	1.96
1807144--1807178	18	1.9	18	88	11	54	54	5	17	22	1.64
1807235--1807278	22	2.0	22	86	4	63	45	0	20	34	1.51
1808060--1808363	149	2.0	149	98	0	590	27	17	20	34	1.95
1808342--1808386	23	2.0	23	86	0	63	20	24	28	26	1.99
1811652--1811696	21	2.1	21	87	0	63	31	28	24	15	1.96
1812368--1812411	22	2.0	22	86	4	63	45	0	22	31	1.53
1813187--1813490	149	2.0	149	98	0	581	27	17	20	34	1.95
1813469--1813513	23	2.0	23	86	0	63	20	24	28	26	1.99
1815426--1815516	47	1.9	47	88	0	137	28	15	28	27	1.96
1815654--1815839	68	2.7	68	85	5	241	25	16	18	39	1.91
1817978--1818046	10	7.0	10	73	8	61	2	13	1	82	0.85
1817999--1818042	19	2.4	18	81	7	61	2	15	0	81	0.78
1821305--1821329	6	4.2	6	100	0	50	32	16	0	52	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1823220--1823354	64	2.1	63	82	6	157	33	17	23	25	1.96
1824440--1824535	31	3.1	31	93	0	165	21	18	25	34	1.96
1824521--1824592	29	2.4	30	88	2	101	16	18	30	34	1.93
1827674--1827811	64	2.2	63	80	6	145	32	15	24	27	1.95
1828902--1828998	31	3.1	31	94	2	176	19	20	25	34	1.96
1828902--1829011	31	3.5	31	87	3	141	18	20	26	34	1.96
1828984--1829055	29	2.4	30	86	2	92	16	19	30	33	1.94
1832137--1832277	64	2.2	63	80	7	151	32	17	24	25	1.96
1833365--1833461	31	3.1	31	94	2	176	19	20	25	34	1.96
1833365--1833515	31	4.9	31	85	3	146	17	21	27	33	1.96
1833447--1833518	29	2.4	30	86	2	92	18	20	29	31	1.96
1834874--1834904	13	2.4	13	94	0	53	67	0	0	32	0.91
1835424--1835468	16	2.8	16	83	12	56	46	0	0	53	1.00
1835450--1835515	22	3.0	22	76	6	71	43	1	0	54	1.09
1836818--1837157	131	2.6	129	81	3	394	42	15	8	32	1.78
1837226--1837259	17	2.1	16	88	5	50	76	17	0	5	0.98
1840095--1840172	23	3.4	22	78	5	75	32	23	19	25	1.98
1840179--1840396	103	2.1	103	95	0	391	37	23	13	26	1.91
1844751--1845090	131	2.6	129	81	3	394	42	15	8	32	1.78
1845159--1845192	17	2.1	16	88	5	50	76	17	0	5	0.98

Tables:   1   2   3   4   5   6   7   8

The End!