genome.fa.s9598.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009598.1 Hibiscus syriacus cultivar Beakdansim tig00116978_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  236377

Tables:   1   2   

This is table  1  of  2  ( 217 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9068--9168	51	1.9	53	86	4	143	45	14	26	12	1.81
9915--10688	105	7.4	105	94	0	1289	32	25	18	23	1.97
12438--12471	17	1.9	18	94	5	61	29	2	0	67	1.05
13768--13797	5	5.8	5	92	7	51	40	23	16	20	1.91
13768--13797	11	2.9	10	95	5	51	40	23	16	20	1.91
13768--13797	16	1.9	15	93	6	51	40	23	16	20	1.91
18485--18634	29	5.2	29	90	3	223	37	4	19	38	1.73
18486--18634	57	2.6	58	90	2	228	37	4	18	38	1.72
18474--18634	86	1.9	86	90	0	259	36	4	19	39	1.71
25816--25848	17	1.9	17	93	0	57	21	42	24	12	1.86
25845--25976	29	4.6	28	87	4	183	37	3	20	38	1.68
25843--25976	58	2.3	59	88	6	202	38	2	20	38	1.68
28023--28062	12	3.1	12	80	19	53	47	15	12	25	1.80
35686--35715	13	2.3	13	94	0	51	70	0	0	30	0.88
37110--37157	16	2.7	19	72	21	59	66	4	6	22	1.32
37213--37517	37	8.5	37	76	9	283	45	7	2	43	1.47
37332--37387	27	2.2	25	90	6	85	50	7	3	39	1.47
37332--37387	25	2.1	27	87	12	82	50	7	3	39	1.47
37283--37413	66	2.0	64	83	5	165	46	5	2	45	1.38
37251--37450	103	2.0	101	85	7	271	46	6	2	45	1.42
37901--37964	24	2.7	22	77	17	67	73	3	6	17	1.17
38329--38382	22	2.5	22	90	0	90	3	48	31	16	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39169--39217	10	4.8	10	78	14	55	75	0	2	22	0.90
39169--39222	16	3.4	17	78	14	53	74	0	1	24	0.92
39220--39270	27	1.9	27	84	11	70	52	5	1	39	1.37
39243--39319	41	1.9	40	86	2	109	41	3	3	50	1.39
39278--39416	37	3.9	37	77	13	116	43	6	4	46	1.49
39300--39546	120	2.1	117	92	6	412	44	6	4	43	1.51
39368--39463	26	3.8	24	70	22	72	44	5	4	45	1.45
39445--39632	35	5.4	35	75	15	133	44	7	4	43	1.53
39471--39606	33	3.9	35	81	10	131	46	7	2	43	1.46
39515--39632	37	3.3	35	78	7	103	45	7	3	43	1.49
40222--41429	165	7.4	165	93	1	1794	22	21	26	29	1.99
40222--41429	328	3.7	329	91	2	1801	22	21	26	29	1.99
40222--41298	493	2.2	493	92	2	1790	23	21	25	29	1.99
42933--42966	18	1.9	17	88	5	50	50	11	11	26	1.73
42982--43166	91	2.0	92	97	1	354	48	13	12	24	1.78
46286--46315	12	2.4	13	88	11	53	60	0	0	40	0.97
46396--46443	23	2.1	22	84	3	60	75	6	2	16	1.11
46854--46907	22	2.5	22	90	0	90	3	48	31	16	1.64
47743--47840	35	2.7	36	79	10	101	43	4	4	47	1.41
47784--48097	34	8.7	34	69	19	147	43	6	4	45	1.49
47907--47936	15	1.9	16	93	6	53	53	6	0	40	1.27
47980--48094	32	3.5	33	80	14	105	48	6	2	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48218--48252	2	18.0	2	88	5	54	48	0	0	51	1.00
56365--56408	19	2.3	19	84	4	52	27	13	6	52	1.66
58866--58929	24	2.7	24	75	15	62	48	0	0	51	1.00
58936--58974	20	2.0	20	89	0	60	48	0	0	51	1.00
58865--58970	29	3.6	28	71	15	74	48	0	0	50	1.13
59803--59847	19	2.4	18	85	10	56	53	6	4	35	1.47
60788--60822	2	18.0	2	94	5	63	51	0	0	48	1.00
64455--64512	30	1.9	30	89	0	89	8	20	25	44	1.80
64854--64953	21	4.9	21	69	4	80	21	19	25	35	1.96
64873--64973	20	4.9	20	68	3	76	17	20	23	37	1.94
64854--64976	41	3.0	41	92	3	196	19	19	24	36	1.95
64965--65036	22	3.4	22	71	11	78	19	19	23	37	1.94
64986--65054	19	3.5	19	69	11	66	20	20	20	39	1.93
64945--65054	41	2.7	41	92	4	177	18	20	21	39	1.93
64854--65017	82	2.0	80	82	8	197	19	19	23	37	1.94
65753--65821	19	3.5	19	69	11	66	39	21	18	20	1.93
65756--65835	41	2.0	41	97	0	151	38	21	17	22	1.93
65847--65991	21	6.6	21	76	12	148	31	27	17	23	1.97
65831--65920	41	2.4	35	83	12	101	35	26	18	18	1.95
65884--65983	49	2.0	50	94	1	175	31	27	16	26	1.96
67408--67513	42	2.7	37	77	17	106	44	2	2	50	1.31
67414--67494	42	1.9	42	89	0	126	45	1	2	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67544--67573	2	15.5	2	93	6	53	50	0	0	50	1.00
68995--69049	15	3.7	15	92	0	92	5	50	0	43	1.25
69895--69952	28	2.1	28	83	6	73	50	3	43	3	1.36
73941--73985	13	3.5	13	81	0	54	68	13	2	15	1.30
80771--80822	3	17.0	3	88	4	77	61	0	0	38	0.96
84385--84521	39	3.7	36	78	11	143	40	3	8	46	1.52
84448--84614	27	5.7	27	70	22	108	43	4	5	46	1.47
84364--84521	37	4.2	36	77	9	147	43	4	8	43	1.55
84448--84672	87	2.5	88	87	11	316	44	4	5	45	1.48
84495--84694	29	7.0	28	70	19	103	45	5	4	44	1.47
84644--84702	29	2.0	29	86	6	82	45	6	3	44	1.47
84644--84713	31	2.3	30	82	9	79	47	5	4	42	1.47
85215--85248	17	2.1	17	88	5	52	52	29	11	5	1.61
86063--86106	13	3.4	13	87	6	63	15	4	4	75	1.14
86062--86123	26	2.3	26	81	15	74	17	3	3	75	1.07
86192--86220	12	2.4	12	100	0	58	24	13	20	41	1.89
88327--88372	21	2.2	21	88	3	67	58	0	0	41	0.98
89724--90108	185	2.1	185	92	0	628	44	8	3	43	1.51
90016--90110	40	2.3	41	78	8	104	43	1	1	54	1.14
91613--91638	7	3.7	7	100	0	52	30	53	0	15	1.42
91704--91766	21	3.0	21	80	13	60	50	26	0	22	1.49
99762--99787	12	2.2	12	100	0	52	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102284--102337	2	28.0	2	88	7	85	48	1	0	50	1.11
102694--102746	3	17.7	3	96	0	97	64	0	1	33	1.05
104249--104280	13	2.4	14	94	5	57	46	0	0	53	1.00
104273--104312	3	13.0	3	89	5	62	67	0	2	30	1.04
104509--104745	122	1.9	122	82	3	298	27	17	14	40	1.89
105022--105413	45	8.7	45	93	2	644	33	19	22	23	1.97
105022--105413	91	4.3	91	92	1	655	33	19	22	23	1.97
106070--106146	22	3.5	22	90	0	100	38	11	12	36	1.80
106087--106175	22	4.0	22	89	0	115	34	11	14	39	1.82
110656--110706	18	2.9	17	82	5	66	3	17	1	76	1.03
116614--116668	23	2.3	25	78	12	62	63	7	3	25	1.37
118192--118223	13	2.4	14	94	5	57	46	0	0	53	1.00
118216--118263	3	16.0	3	85	8	62	66	2	2	29	1.14
119307--119344	16	2.2	17	90	9	60	28	0	0	71	0.87
119533--119574	16	2.6	17	85	7	52	54	4	0	40	1.21
120695--120736	3	14.0	3	87	9	59	0	38	0	61	0.96
121934--122035	3	34.0	3	100	0	204	33	0	0	66	0.92
122385--122459	29	2.5	29	79	14	73	24	8	14	53	1.68
123296--123425	20	6.4	20	79	7	111	34	23	13	27	1.93
123229--123406	40	4.4	40	74	10	123	34	24	13	27	1.93
123229--123408	80	2.2	81	82	4	204	34	23	13	28	1.93
123296--123429	40	3.3	40	78	12	139	34	23	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126712--126752	18	2.3	18	91	0	64	53	24	2	19	1.57
127142--127191	25	2.0	25	88	0	73	24	6	24	46	1.75
127585--127621	18	2.1	18	89	0	56	29	8	10	51	1.65
127583--127629	24	2.0	24	91	0	76	34	6	10	48	1.63
128727--128761	14	2.6	13	82	8	52	42	25	22	8	1.82
128749--128793	20	2.2	20	92	0	72	28	26	17	26	1.98
128860--129010	64	2.4	64	92	1	241	52	16	2	27	1.57
128989--129014	13	2.0	13	100	0	52	46	23	0	30	1.53
130363--130456	21	4.5	21	79	4	100	21	21	37	20	1.95
130363--130456	42	2.2	42	90	0	143	21	21	37	20	1.95

Tables:   1   2