genome.fa.s9609.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009609.1 Hibiscus syriacus cultivar Beakdansim tig00116995_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1078827

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 509 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1031919--1031979	21	3.0	21	78	9	72	19	32	29	18	1.95
1031919--1031979	20	3.0	20	85	2	77	19	32	29	18	1.95
1031945--1032027	33	2.4	34	88	4	123	21	28	27	21	1.99
1031965--1032027	15	4.0	15	75	18	65	20	30	26	22	1.98
1032141--1032182	21	2.0	21	95	0	75	23	21	28	26	1.99
1032211--1032250	20	1.9	21	85	10	55	37	37	10	15	1.80
1032465--1032534	34	2.1	32	86	5	95	31	15	30	22	1.95
1050423--1050493	34	2.1	34	82	12	83	25	11	16	46	1.80
1051188--1051227	3	13.3	3	100	0	80	32	0	0	67	0.91
1054469--1054500	17	1.9	16	100	0	55	25	0	28	46	1.53
1057890--1057935	14	3.3	14	96	0	83	26	36	30	6	1.82
1057918--1057977	23	2.6	23	86	5	77	26	26	36	10	1.88
1058036--1058130	10	8.9	10	70	13	64	10	34	29	25	1.89
1058024--1058115	33	2.8	32	87	6	123	8	35	28	27	1.86
1058059--1058146	43	2.1	40	83	6	104	10	31	31	26	1.89
1058059--1058146	20	4.2	20	81	8	95	10	31	31	26	1.89
1060637--1060661	3	8.3	3	100	0	50	36	0	0	64	0.94
1065961--1066044	43	1.9	43	83	7	107	22	27	3	46	1.68
1068161--1068196	2	18.0	2	100	0	72	50	0	0	50	1.00
1068361--1068428	21	3.4	21	66	25	65	35	1	39	23	1.64
1068340--1068434	39	2.4	39	92	0	172	32	5	40	22	1.76
1073543--1073630	39	2.3	39	95	0	158	35	4	39	20	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1073561--1073627	21	3.3	21	64	19	61	38	1	37	22	1.63
1074106--1074144	20	2.0	20	89	0	60	38	5	15	41	1.69
1074158--1074196	20	2.0	20	84	0	51	35	2	15	46	1.60
1074105--1074254	53	2.9	52	93	3	257	33	5	12	49	1.62
1074211--1074250	20	2.0	20	90	0	62	37	5	10	47	1.59
1078728--1078766	20	2.0	20	89	0	60	38	5	15	41	1.69
1078780--1078816	19	1.9	19	94	0	65	37	5	13	43	1.67

Tables:   1   2   3   4   5

The End!