genome.fa.s9626.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009626.1 Hibiscus syriacus cultivar Beakdansim tig00117018_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  478969

Tables:   1   2   3   

This is table  2  of  3  ( 251 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115783--115840	14	3.9	14	79	16	71	48	24	17	10	1.78
115767--115857	32	2.8	32	93	3	146	48	21	17	12	1.80
115900--115954	20	2.8	19	89	5	83	16	23	23	36	1.94
117805--117840	14	2.6	14	90	0	54	30	0	22	47	1.52
117957--118024	19	3.8	19	85	14	101	47	17	22	13	1.82
118043--118080	20	1.9	20	94	0	67	15	21	23	39	1.92
119022--119075	24	2.2	24	90	0	81	24	16	20	38	1.92
121559--121685	33	3.8	33	83	4	175	43	19	22	14	1.88
121560--121692	66	2.0	66	92	0	221	42	19	21	16	1.89
121539--121689	19	8.7	19	65	21	71	42	20	21	15	1.89
121685--121727	20	2.2	20	87	4	61	16	18	23	41	1.89
121868--121904	14	2.6	14	91	0	65	45	24	0	29	1.53
123263--123329	21	3.2	21	68	4	55	19	20	35	23	1.95
123263--123385	42	2.9	41	80	7	113	22	17	36	22	1.95
124489--124531	21	2.0	22	82	13	54	48	2	4	44	1.36
125410--125508	33	3.0	33	87	1	135	39	25	23	12	1.89
125480--125550	19	3.7	19	90	3	115	46	22	19	11	1.81
125385--125550	20	9.1	19	72	16	118	43	22	22	12	1.86
125546--125626	19	4.5	19	74	16	73	11	18	23	46	1.81
126138--126190	20	2.7	20	93	0	88	26	20	28	24	1.99
126199--126272	20	3.7	20	98	0	139	27	17	24	31	1.97
126139--126293	81	1.9	81	81	2	186	23	19	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126340--126383	21	2.1	21	86	0	61	34	31	15	18	1.92
126869--126894	2	13.0	2	100	0	52	50	0	0	50	1.00
127685--128034	189	1.8	190	87	4	519	40	6	8	44	1.60
139032--139106	37	2.0	37	89	0	114	37	4	28	30	1.75
149345--149377	17	1.9	17	93	0	57	69	0	0	30	0.88
150828--150888	27	2.5	24	78	10	61	73	4	1	19	1.10
151027--151092	27	2.4	27	82	9	82	60	4	4	30	1.37
152599--153013	105	4.0	106	80	7	476	19	21	25	33	1.97
152647--153012	203	1.8	203	95	0	660	19	21	25	33	1.97
152754--153012	98	2.6	97	82	6	284	19	21	25	33	1.97
152955--153145	105	1.8	103	89	4	303	21	18	25	33	1.97
153862--153903	19	2.3	19	88	8	61	4	14	2	78	1.01
153888--153985	49	1.9	51	84	10	130	15	22	15	46	1.82
164772--164837	27	2.4	27	82	9	82	60	4	4	30	1.37
168411--168457	24	1.9	25	83	12	62	25	4	0	70	1.05
170908--170941	17	2.0	17	88	0	50	23	0	0	76	0.79
184561--184621	23	2.9	21	85	7	79	21	36	24	18	1.95
187406--187442	20	1.9	19	89	10	58	24	32	24	18	1.97
192219--192280	24	2.6	24	84	0	79	14	11	20	53	1.72
195960--196017	10	5.6	10	75	15	55	8	8	22	60	1.53
195965--196013	16	3.1	16	93	0	89	6	10	24	59	1.53
199018--199058	17	2.4	18	84	12	59	34	2	4	58	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208350--208380	2	15.5	2	100	0	62	48	0	0	51	1.00
218677--219147	237	2.0	237	97	0	897	45	5	7	40	1.57
230658--230691	16	2.1	16	94	0	59	32	8	26	32	1.87
236544--236575	6	5.3	6	100	0	64	18	31	15	34	1.93
237492--237571	26	3.0	26	87	1	106	36	12	13	37	1.83
237364--237723	194	1.9	187	84	5	479	40	8	13	38	1.75
237671--237852	94	1.9	95	91	5	298	38	8	15	37	1.77
237528--237961	168	2.5	172	84	4	538	37	8	15	37	1.79
237780--237910	26	4.9	26	69	13	95	38	10	15	35	1.82
237766--237935	81	2.1	80	93	1	286	39	9	14	36	1.79
237672--238029	175	2.1	174	89	2	540	37	8	15	38	1.77
237847--238074	94	2.4	94	88	1	359	35	8	15	41	1.77
238451--238507	30	1.9	30	96	0	105	49	8	7	35	1.61
239959--240003	20	2.4	18	79	13	54	20	31	15	33	1.93
239972--240016	20	2.2	20	100	0	90	13	28	17	40	1.88
251436--251477	22	1.9	22	90	0	66	21	40	26	11	1.88
252425--252468	21	2.0	22	86	4	63	47	0	4	47	1.22
252646--252690	21	2.0	23	83	8	58	44	4	0	51	1.21
252697--252730	17	2.0	17	88	11	52	64	0	5	29	1.17
252736--252768	16	2.1	16	88	11	50	60	0	0	39	0.97
254026--254103	3	26.0	3	84	10	106	64	0	0	35	0.94
264786--264833	20	2.3	21	82	3	62	56	2	0	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269264--269350	35	2.5	34	80	12	97	55	10	8	26	1.61
269565--269599	3	11.7	3	93	0	61	2	34	28	34	1.72
271652--271692	18	2.3	18	91	4	66	63	2	4	29	1.28
276326--276384	29	2.0	29	93	6	102	32	6	18	42	1.77
277330--277513	99	1.9	99	87	0	269	26	16	13	44	1.84
287111--287150	21	1.9	21	89	0	62	25	40	25	10	1.86
289805--289857	20	2.6	20	96	3	97	18	39	24	16	1.91
301054--301135	18	4.6	18	90	0	119	17	47	21	13	1.81
301990--302024	18	1.9	18	88	0	52	54	0	17	28	1.43
304352--304406	22	2.5	22	90	0	83	18	30	25	25	1.98
312023--312054	16	2.0	16	93	0	55	34	25	6	34	1.81
319255--319296	16	2.6	16	81	7	50	54	14	7	23	1.64
319509--319607	48	2.1	48	86	0	135	49	21	9	20	1.76
332894--332937	18	2.4	19	85	7	56	40	0	0	59	0.98
333960--334022	32	1.9	33	96	3	119	41	6	7	44	1.59
334048--334093	23	2.0	23	100	0	92	52	8	13	26	1.69
338246--338281	2	19.0	2	88	11	58	47	0	0	52	1.00
349686--349734	25	2.0	25	88	4	73	44	6	18	30	1.74
354512--354541	2	15.0	2	100	0	60	50	0	0	50	1.00
354972--355006	16	2.3	15	90	9	54	74	8	0	17	1.06
356328--356380	27	2.0	27	92	3	90	39	0	9	50	1.35
367446--367558	60	1.9	59	83	1	145	37	7	15	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374455--374509	22	2.5	22	75	0	56	29	9	23	38	1.85
385356--385380	13	1.9	13	100	0	50	56	12	0	32	1.36
385866--385913	17	2.9	17	84	6	64	45	12	0	41	1.42
389908--389940	16	2.0	17	88	5	50	18	18	12	51	1.76
391961--392047	46	1.9	46	86	6	124	29	19	18	32	1.96
391988--392133	65	2.2	64	82	7	170	26	17	23	32	1.97
394900--394933	17	1.9	18	88	5	52	32	0	2	64	1.08
400051--400079	2	14.5	2	100	0	58	48	0	51	0	1.00
404470--405059	297	2.0	291	97	2	1101	28	19	20	31	1.97
409119--409183	23	2.8	23	88	0	94	36	18	4	40	1.71
408761--409815	431	2.5	431	96	1	1960	38	11	7	42	1.69
409551--409613	23	2.7	23	92	0	99	38	20	4	36	1.74
410031--410114	39	2.2	39	93	0	141	17	14	19	48	1.81
410373--410418	24	1.9	24	90	0	74	50	15	2	32	1.56
410845--410907	23	2.7	23	92	0	99	38	20	4	36	1.74
411987--412476	182	2.7	183	94	1	862	33	17	14	34	1.91
413966--414010	3	15.0	3	85	0	63	26	33	2	37	1.69
413970--414046	12	6.4	12	84	0	82	20	31	7	40	1.81
413970--414049	6	13.3	6	78	5	63	20	31	7	41	1.80
414273--414386	57	2.0	58	98	1	221	17	29	17	35	1.93
415549--416500	196	4.9	198	93	4	1600	31	16	15	36	1.90
416617--416660	19	2.4	19	88	3	63	56	11	2	29	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418425--418486	33	1.9	33	86	3	90	24	46	0	29	1.53
418522--418564	20	2.1	21	91	4	70	16	32	11	39	1.84
420773--420819	20	2.4	19	79	10	58	21	17	8	53	1.70
420954--421000	20	2.3	20	89	10	78	17	17	10	55	1.69
421049--421767	228	3.2	228	95	0	1289	39	7	7	45	1.60
422484--422508	12	2.1	12	100	0	50	48	0	0	52	1.00
424417--424599	92	2.0	94	84	6	248	38	8	11	40	1.72
437703--437731	2	14.5	2	100	0	58	51	0	0	48	1.00
449158--449197	2	20.0	2	100	0	80	50	0	0	50	1.00
449523--449576	21	2.6	21	93	0	90	27	20	22	29	1.98

Tables:   1   2   3